Mike Jiang
| Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/ggcyto |
| git_branch: devel |
| git_last_commit: 092e12e |
| git_last_commit_date: 2025-04-15 10:57:30 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-09 12:09 -0400 (Sat, 09 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 858/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ggcyto 1.37.0 (landing page) Mike Jiang
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the ggcyto package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggcyto.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ggcyto |
| Version: 1.37.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto |
| StartedAt: 2025-08-08 16:29:11 -0400 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 16:29:37 -0400 (Fri, 08 Aug 2025) |
| EllapsedTime: 26.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto
###
##############################################################################
##############################################################################
* checking for file ‘ggcyto/DESCRIPTION’ ... OK
* preparing ‘ggcyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Top_features_of_ggcyto.Rmd’ using rmarkdown
2025-08-08 16:29:19.942 R[64596:486349920] XType: Using static font registry.
Quitting from Top_features_of_ggcyto.Rmd:99-115 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'openCyto'
---
Backtrace:
▆
1. └─base::loadNamespace(x)
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base (local) withOneRestart(expr, restarts[[1L]])
4. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Top_features_of_ggcyto.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘Top_features_of_ggcyto.Rmd’
--- re-building ‘autoplot.Rmd’ using rmarkdown
--- finished re-building ‘autoplot.Rmd’
--- re-building ‘ggcyto.GatingSet.Rmd’ using rmarkdown
--- finished re-building ‘ggcyto.GatingSet.Rmd’
--- re-building ‘ggcyto.flowSet.Rmd’ using rmarkdown
Quitting from ggcyto.flowSet.Rmd:138-141 [unnamed-chunk-19]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'openCyto'
---
Backtrace:
▆
1. ├─flowCore::fsApply(...)
2. ├─flowCore::fsApply(...)
3. │ └─base::match.fun(FUN)
4. └─base::loadNamespace(x)
5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
6. └─base (local) withOneRestart(expr, restarts[[1L]])
7. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggcyto.flowSet.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘ggcyto.flowSet.Rmd’
SUMMARY: processing the following files failed:
‘Top_features_of_ggcyto.Rmd’ ‘ggcyto.flowSet.Rmd’
Error: Vignette re-building failed.
Execution halted