David Rossell
| Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/gaga |
| git_branch: devel |
| git_last_commit: 7a2fdcf |
| git_last_commit_date: 2025-04-15 09:41:15 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 770/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gaga 2.55.0 (landing page) David Rossell
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the gaga package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: gaga |
| Version: 2.55.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL gaga |
| StartedAt: 2025-06-16 20:18:55 -0000 (Mon, 16 Jun 2025) |
| EndedAt: 2025-06-16 20:19:14 -0000 (Mon, 16 Jun 2025) |
| EllapsedTime: 19.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL gaga
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘gaga’ ...
** this is package ‘gaga’ version ‘2.55.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c cseqdesma.c -o cseqdesma.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c cstat.c -o cstat.o
cstat.c: In function ‘free_vector’:
cstat.c:666:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
666 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function ‘free_dvector’:
cstat.c:672:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 8)’ must not be NULL [-Waddress]
672 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function ‘free_ivector’:
cstat.c:678:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress]
678 | if( (v+nl) != NULL ) free((char *) (v+nl));
| ^~
cstat.c: In function ‘free_dmatrix’:
cstat.c:686:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 8)’ must not be NULL [-Waddress]
686 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
| ^~
cstat.c:688:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
688 | if( (m+nrl) != NULL ) free((char *) (m+nrl));
| ^~
cstat.c: In function ‘free_imatrix’:
cstat.c:696:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 4)’ must not be NULL [-Waddress]
696 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL )
| ^~
cstat.c:698:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress]
698 | if( (m+nrl) != NULL ) free((char *) (m+nrl));
| ^~
cstat.c: At top level:
cstat.c:22:19: warning: ‘css_c_sccs_id’ defined but not used [-Wunused-const-variable=]
22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
| ^~~~~~~~~~~~~
cstat.c:21:19: warning: ‘vector_c_sccs_id’ defined but not used [-Wunused-const-variable=]
21 | static const char vector_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: ‘nrutil_c_sccs_id’ defined but not used [-Wunused-const-variable=]
20 | static const char nrutil_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: ‘mess_c_sccs_id’ defined but not used [-Wunused-const-variable=]
19 | static const char mess_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~
cstat.c:18:19: warning: ‘interface_c_sccs_id’ defined but not used [-Wunused-const-variable=]
18 | static const char interface_c_sccs_id[] = "%W%";
| ^~~~~~~~~~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-gaga/00new/gaga/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gaga)