##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:gDRstyle.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings gDRstyle_1.7.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/gDRstyle.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'gDRstyle/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'gDRstyle' version '1.7.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gDRstyle' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
installLocalPackage 3.19   1.73    8.18
checkPackage        1.53   0.27   93.07
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL gDRstyle
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'gDRstyle' ...
** this is package 'gDRstyle' version '1.7.2'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gDRstyle)

R version 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(gDRstyle)
> 
> test_check("gDRstyle")
##------ Thu Jun 19 02:20:35 2025 ------##
##------ Thu Jun 19 02:20:35 2025 ------##
✔ | F W  S  OK | Context

⠏ |          0 | pkg                                                            
✔ |          1 | pkg

══ Results ═════════════════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
── Initialising site ───────────────────────────────────────────────────────────

Copying <pkgdown>/BS3/assets/bootstrap-toc.css to bootstrap-toc.css

Copying <pkgdown>/BS3/assets/bootstrap-toc.js to bootstrap-toc.js

Copying <pkgdown>/BS3/assets/docsearch.css to docsearch.css

Copying <pkgdown>/BS3/assets/docsearch.js to docsearch.js

Copying <pkgdown>/BS3/assets/link.svg to link.svg

Copying <pkgdown>/BS3/assets/pkgdown.css to pkgdown.css

Copying <pkgdown>/BS3/assets/pkgdown.js to pkgdown.js

── Building pkgdown site for package fakePkg ───────────────────────────────────

Reading from: F:/biocbuild/bbs-3.22-bioc/R/library/gDRstyle/tst_pkgs/dummy_pkg

Writing to: F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmp2pFsM4/filef964283c1f46

── Sitrep ──────────────────────────────────────────────────────────────────────

✖ Bootstrap 3 is deprecated; please switch to Bootstrap 5.

ℹ Learn more at

  <https://www.tidyverse.org/blog/2021/12/pkgdown-2-0-0/#bootstrap-5>.

✖ URLs not ok.

  In _pkgdown.yml, url is missing.

  See details in `vignette(pkgdown::metadata)`.

✔ Favicons ok.

✔ Open graph metadata ok.

✔ Articles metadata ok.

✔ Reference metadata ok.

── Initialising site ───────────────────────────────────────────────────────────

── Building home ───────────────────────────────────────────────────────────────

Writing `authors.html`

Reading 'DESCRIPTION'

Writing `index.html`

Writing `404.html`

── Building function reference ─────────────────────────────────────────────────

Writing `reference/index.html`

Reading man/tstCharLimitLintr.Rd

Writing `reference/tstCharLimitLintr.html`

── Building sitemap ────────────────────────────────────────────────────────────

Writing `sitemap.xml`

── Checking for problems ───────────────────────────────────────────────────────

── Finished building pkgdown site for package fakePkg ──────────────────────────

##------ Thu Jun 19 02:20:43 2025 ------##
── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file 'F:\biocbuild\bbs-3.22-bioc\R\library\gDRstyle\tst_pkgs\dummy_pkg/DESCRIPTION' ... OK
* preparing 'fakePkg':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'fakePkg_1.0.tar.gz'

── R CMD check ─────────────────────────────────────────────────────────────────
* using log directory 'F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmp2pFsM4/filef9647df95f32/fakePkg.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-tests --no-manual'
* checking for file 'fakePkg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fakePkg' version '1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fakePkg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  What license is it under?
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... SKIPPED
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmp2pFsM4/filef9647df95f32/fakePkg.Rcheck/00check.log'
for details.
##------ Thu Jun 19 02:21:06 2025 ------##
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 24 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-dependencies.R:16:1'
• skip, if there is installed fakePkg (1): 'test-build.R:53:3'

[ FAIL 0 | WARN 0 | SKIP 2 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
   3.60    0.46   33.87