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This page was generated on 2025-06-19 12:04 -0400 (Thu, 19 Jun 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4810
palomino8Windows Server 2022 Datacenterx644.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" 4548
kjohnson3macOS 13.7.1 Venturaarm644.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" 4528
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 751/2309HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowTime 1.33.0  (landing page)
R. Clay Wright
Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025)
git_url: https://git.bioconductor.org/packages/flowTime
git_branch: devel
git_last_commit: 7e5103e
git_last_commit_date: 2025-04-15 11:09:48 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for flowTime on kjohnson3

To the developers/maintainers of the flowTime package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowTime.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowTime
Version: 1.33.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowTime
StartedAt: 2025-06-18 16:19:34 -0400 (Wed, 18 Jun 2025)
EndedAt: 2025-06-18 16:19:41 -0400 (Wed, 18 Jun 2025)
EllapsedTime: 7.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowTime
###
##############################################################################
##############################################################################


* checking for file ‘flowTime/DESCRIPTION’ ... OK
* preparing ‘flowTime’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gating-vignette.Rmd’ using rmarkdown

Quitting from gating-vignette.Rmd:36-48 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'openCyto'
---
Backtrace:
    ▆
 1. └─base::library("openCyto")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'gating-vignette.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘gating-vignette.Rmd’

--- re-building ‘steady-state-vignette.Rmd’ using rmarkdown
2025-06-18 16:19:39.483 R[90674:122506428] XType: Using static font registry.
--- finished re-building ‘steady-state-vignette.Rmd’

--- re-building ‘time-course-vignette.Rmd’ using rmarkdown
--- finished re-building ‘time-course-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘gating-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted