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This page was generated on 2025-08-09 12:09 -0400 (Sat, 09 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 747/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPloidy 1.35.0  (landing page)
Tyler Smith
Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025)
git_url: https://git.bioconductor.org/packages/flowPloidy
git_branch: devel
git_last_commit: 030d8f5
git_last_commit_date: 2025-04-15 11:05:56 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'flowCore' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for flowPloidy on kjohnson3

To the developers/maintainers of the flowPloidy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPloidy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowPloidy
Version: 1.35.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy
StartedAt: 2025-08-08 16:22:04 -0400 (Fri, 08 Aug 2025)
EndedAt: 2025-08-08 16:22:16 -0400 (Fri, 08 Aug 2025)
EllapsedTime: 12.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy
###
##############################################################################
##############################################################################


* checking for file ‘flowPloidy/DESCRIPTION’ ... OK
* preparing ‘flowPloidy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘flowPloidy-gettingStarted.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.

Error: processing vignette 'flowPloidy-gettingStarted.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpxgNMnN/Rbuild215c4b49c045/flowPloidy/vignettes/flowPloidy-gettingStarted.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See flowPloidy-gettingStarted.log for more info.
--- failed re-building ‘flowPloidy-gettingStarted.Rmd’

--- re-building ‘histogram-tour.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.

Error: processing vignette 'histogram-tour.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpxgNMnN/Rbuild215c4b49c045/flowPloidy/vignettes/histogram-tour.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See histogram-tour.log for more info.
--- failed re-building ‘histogram-tour.Rmd’

SUMMARY: processing the following files failed:
  ‘flowPloidy-gettingStarted.Rmd’ ‘histogram-tour.Rmd’

Error: Vignette re-building failed.
Execution halted