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This page was generated on 2025-08-12 12:13 -0400 (Tue, 12 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4553
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.1 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 701/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
faers 1.5.0  (landing page)
Yun Peng
Snapshot Date: 2025-08-11 13:45 -0400 (Mon, 11 Aug 2025)
git_url: https://git.bioconductor.org/packages/faers
git_branch: devel
git_last_commit: dd742d3
git_last_commit_date: 2025-04-15 13:28:43 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for faers on taishan

To the developers/maintainers of the faers package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/faers.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: faers
Version: 1.5.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:faers.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings faers_1.5.0.tar.gz
StartedAt: 2025-08-12 06:39:18 -0000 (Tue, 12 Aug 2025)
EndedAt: 2025-08-12 06:40:18 -0000 (Tue, 12 Aug 2025)
EllapsedTime: 60.1 seconds
RetCode: 0
Status:   OK  
CheckDir: faers.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:faers.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings faers_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/faers.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘faers/DESCRIPTION’ ... OK
* this is package ‘faers’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘faers’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
fda_drugs 1.025  0.139   7.957
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

faers.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL faers
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘faers’ ...
** this is package ‘faers’ version ‘1.5.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (faers)

Tests output

faers.Rcheck/tests/testthat.Rout


R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(faers)
> 
> test_check("faers")
Starting 2 test processes
[ FAIL 0 | WARN 0 | SKIP 16 | PASS 274 ]

══ Skipped tests (16) ══════════════════════════════════════════════════════════
• On CRAN (1): 'test_meta.R:2:5'
• dir.exists("~/Data/MedDRA/MedDRA_26_1_English") is not TRUE (15):
  'test_counts.R:2:5', 'test_dedup.R:2:5', 'test_combine.R:49:5',
  'test_combine.R:78:5', 'test_meddra.R:6:5', 'test_merge.R:57:5',
  'test_signal.R:2:5', 'test_signal.R:29:5', 'test_standardize.R:2:5',
  'test_methods.R:103:5', 'test_methods.R:147:5', 'test_methods.R:195:5',
  'test_methods.R:218:5', 'test_methods.R:241:5', 'test_methods.R:550:5'

[ FAIL 0 | WARN 0 | SKIP 16 | PASS 274 ]
> 
> proc.time()
   user  system elapsed 
 10.930   0.633   7.186 

Example timings

faers.Rcheck/faers-Ex.timings

nameusersystemelapsed
FAERS-class0.4970.0440.545
FAERS-methods0.2070.0080.216
faers0.0580.0040.062
faers_available1.8580.0683.364
faers_before_period0.0010.0000.001
faers_clearcache0.0140.0000.019
faers_combine0.1070.0040.115
faers_counts0.5240.0080.537
faers_dedup0.1560.0040.160
faers_download0.0390.0000.039
faers_load0.0060.0000.007
faers_merge0.1290.0000.130
faers_meta1.7220.0193.183
faers_parse0.0310.0040.035
faers_phv_signal0.1700.0240.195
faers_standardize0.1520.0040.157
fda_drugs1.0250.1397.957
phv_signal3.0810.1913.290