Multiple platform build/check report for BioC 3.22 - BUILD results for epimutacions on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for epimutacions on palomino8

To the developers/maintainers of the epimutacions package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epimutacions.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: epimutacions

Version: 1.13.0

Command: chmod a+r epimutacions -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data epimutacions

StartedAt: 2025-08-08 18:51:36 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 18:54:29 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 172.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r epimutacions -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data epimutacions
###
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* checking for file 'epimutacions/DESCRIPTION' ... OK
* preparing 'epimutacions':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'epimutacions.Rmd' using rmarkdown

Quitting from epimutacions.Rmd:609-611 [annot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `checkDataset()`:
! The given dataset:  hsapiens_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
---
Backtrace:
    ▆
 1. └─epimutacions::annotate_epimutations(epi_mvo, omim = TRUE)
 2.   └─epimutacions:::annotate_cpg(epi_results, db = db, ...)
 3.     └─biomaRt::useEnsembl(...)
 4.       └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
 5.         └─biomaRt:::checkDataset(dataset = dataset, mart = mart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'epimutacions.Rmd' failed with diagnostics:
The given dataset:  hsapiens_gene_ensembl , is not valid.  Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building 'epimutacions.Rmd'

SUMMARY: processing the following file failed:
  'epimutacions.Rmd'

Error: Vignette re-building failed.
Execution halted