Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:08 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 487/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.17.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz |
StartedAt: 2025-08-08 20:20:11 -0400 (Fri, 08 Aug 2025) |
EndedAt: 2025-08-08 20:22:08 -0400 (Fri, 08 Aug 2025) |
EllapsedTime: 117.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 11.397 0.695 9.524 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 0.861 | 0.079 | 0.948 | |
PhytoFilter | 0.714 | 0.050 | 0.774 | |
PhytopFilter | 0.751 | 0.056 | 0.818 | |
accTest | 0.484 | 0.039 | 0.532 | |
accuracy | 0.470 | 0.028 | 0.500 | |
cellmargin | 0.396 | 0.031 | 0.433 | |
clusterExtract | 1.030 | 0.047 | 1.090 | |
clusterExtractp | 1.041 | 0.051 | 1.107 | |
debrisNc | 0.610 | 0.048 | 0.669 | |
fullFlowframe-MarginEvents-method | 0.380 | 0.035 | 0.426 | |
fullFlowframe-PhytopFilter-method | 0.656 | 0.047 | 0.710 | |
fullFlowframe | 0.327 | 0.025 | 0.358 | |
gateFunc | 11.397 | 0.695 | 9.524 | |
ggpairsDens | 3.718 | 0.129 | 3.870 | |
ggplotDens | 0.931 | 0.053 | 0.991 | |
ggplotDens2 | 0.896 | 0.045 | 0.956 | |
goodfcs | 0.061 | 0.010 | 0.072 | |
is.DebrisFilter | 0.000 | 0.001 | 0.001 | |
is.MarginEvents | 0.001 | 0.000 | 0.000 | |
is.PhytopFilter | 0 | 0 | 0 | |
is.flowFrame | 0 | 0 | 0 | |
is.flowSet | 0.000 | 0.000 | 0.001 | |
lnTrans | 0.239 | 0.016 | 0.259 | |
newFlowframe | 0.246 | 0.086 | 0.336 | |
nona | 0.121 | 0.011 | 0.135 | |
noneg | 0.184 | 0.013 | 0.198 | |
oneDgate | 0.247 | 0.093 | 0.343 | |
pairsPlot | 1.720 | 0.167 | 1.905 | |
pigmentGate | 0.302 | 0.050 | 0.355 | |
reducedFlowframe-MarginEvents-method | 0.354 | 0.022 | 0.381 | |
reducedFlowframe | 0.361 | 0.025 | 0.391 | |
retain | 0.023 | 0.002 | 0.026 | |
rowNumbers | 0.235 | 0.052 | 0.290 | |
summaries-DebrisFilter-method | 0.335 | 0.020 | 0.359 | |
summaries-MarginEvents-method | 0.635 | 0.042 | 0.690 | |
summaries-PhytopFilter-method | 0.659 | 0.041 | 0.707 | |
summaries | 0.339 | 0.022 | 0.365 | |