| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:06 -0400 (Sat, 09 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 360/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Likun Wang
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the cisPath package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cisPath.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cisPath |
| Version: 1.49.1 |
| Command: chmod a+r cisPath -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cisPath |
| StartedAt: 2025-08-08 18:02:49 -0400 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 18:03:06 -0400 (Fri, 08 Aug 2025) |
| EllapsedTime: 17.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r cisPath -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cisPath
###
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* checking for file 'cisPath/DESCRIPTION' ... OK
* preparing 'cisPath':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'cisPath' ...
** this is package 'cisPath' version '1.49.1'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cisPath.cpp -o cisPath.o
g++ -std=gnu++17 -shared -s -static-libgcc -o cisPath.dll tmp.def cisPath.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpCkwq8m/Rinst22320587a238a/00LOCK-cisPath/00new/cisPath/libs/x64
** R
Error in .install_package_code_files(".", instdir) :
files in 'F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpCkwq8m/Rbuild22320526e574b/cisPath/R' missing from 'Collate' field:
zzz.R
ERROR: unable to collate and parse R files for package 'cisPath'
* removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpCkwq8m/Rinst22320587a238a/cisPath'
-----------------------------------
ERROR: package installation failed