Hin-Tak Leung
| Snapshot Date: 2025-08-08 13:45 -0400 (Fri, 08 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/chopsticks |
| git_branch: devel |
| git_last_commit: 916b2f4 |
| git_last_commit_date: 2025-04-15 10:01:51 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-08-09 12:09 -0400 (Sat, 09 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 348/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| chopsticks 1.75.0 (landing page) Hin-Tak Leung
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the chopsticks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chopsticks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: chopsticks |
| Version: 1.75.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chopsticks |
| StartedAt: 2025-08-08 15:51:53 -0400 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 15:51:54 -0400 (Fri, 08 Aug 2025) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chopsticks
###
##############################################################################
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* checking for file ‘chopsticks/DESCRIPTION’ ... OK
* preparing ‘chopsticks’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘chopsticks’ ...
** this is package ‘chopsticks’ version ‘1.75.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adler32.c -o adler32.o
adler32.c:57:23: error: unknown type name 'adler'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:30: error: unknown type name 'buf'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:35: error: unknown type name 'len'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:39: error: expected ';' after top level declarator
uLong ZEXPORT adler32(adler, buf, len)
^
;
adler32.c:61:1: error: expected identifier or '('
{
^
adler32.c:128:31: error: unknown type name 'adler1'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:39: error: unknown type name 'adler2'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:47: error: unknown type name 'len2'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:52: error: expected ';' after top level declarator
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
;
adler32.c:132:1: error: expected identifier or '('
{
^
10 errors generated.
make: *** [adler32.o] Error 1
ERROR: compilation failed for package ‘chopsticks’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpG1UoPk/Rinst9b74790be85f/chopsticks’
-----------------------------------
ERROR: package installation failed