Multiple platform build/check report for BioC 3.22 - BUILD results for cellxgenedp on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for cellxgenedp on nebbiolo2

To the developers/maintainers of the cellxgenedp package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellxgenedp.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: cellxgenedp

Version: 1.13.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cellxgenedp

StartedAt: 2025-06-18 16:48:34 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 16:49:16 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 42.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cellxgenedp
###
##############################################################################
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* checking for file ‘cellxgenedp/DESCRIPTION’ ... OK
* preparing ‘cellxgenedp’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘a_using_cellxgenedp.Rmd’ using rmarkdown

Quitting from a_using_cellxgenedp.Rmd:63-68 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'zellkonverter':
 object 'nzindex' is not exported by 'namespace:DelayedArray'
---
Backtrace:
    ▆
 1. └─base::library(zellkonverter)
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'a_using_cellxgenedp.Rmd' failed with diagnostics:
package or namespace load failed for 'zellkonverter':
 object 'nzindex' is not exported by 'namespace:DelayedArray'
--- failed re-building ‘a_using_cellxgenedp.Rmd’

--- re-building ‘b_case_studies.Rmd’ using rmarkdown
[WARNING] Duplicate link reference '[OLSr]' at line 580 column 1
--- finished re-building ‘b_case_studies.Rmd’

SUMMARY: processing the following file failed:
  ‘a_using_cellxgenedp.Rmd’

Error: Vignette re-building failed.
Execution halted