Multiple platform build/check report for BioC 3.22 - BUILD results for bluster on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for bluster on palomino8

To the developers/maintainers of the bluster package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bluster.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: bluster

Version: 1.19.0

Command: chmod a+r bluster -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bluster

StartedAt: 2025-08-08 17:44:17 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 17:46:42 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 144.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r bluster -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bluster
###
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* checking for file 'bluster/DESCRIPTION' ... OK
* preparing 'bluster':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'clusterRows.Rmd' using rmarkdown

Quitting from clusterRows.Rmd:122-126 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'mbkmeans'
---
Backtrace:
    ▆
 1. ├─bluster::clusterRows(mat, MbkmeansParam(20))
 2. ├─bluster::clusterRows(mat, MbkmeansParam(20))
 3. └─base::loadNamespace(x)
 4.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 5.     └─base (local) withOneRestart(expr, restarts[[1L]])
 6.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'clusterRows.Rmd' failed with diagnostics:
there is no package called 'mbkmeans'
--- failed re-building 'clusterRows.Rmd'

--- re-building 'diagnostics.Rmd' using rmarkdown
--- finished re-building 'diagnostics.Rmd'

SUMMARY: processing the following file failed:
  'clusterRows.Rmd'

Error: Vignette re-building failed.
Execution halted