Jiaxing Lin
| Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/bcSeq |
| git_branch: devel |
| git_last_commit: 2ece820 |
| git_last_commit_date: 2025-04-15 11:16:21 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:03 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 150/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bcSeq 1.31.0 (landing page) Jiaxing Lin
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the bcSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bcSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bcSeq |
| Version: 1.31.0 |
| Command: chmod a+r bcSeq -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bcSeq |
| StartedAt: 2025-06-18 17:33:39 -0400 (Wed, 18 Jun 2025) |
| EndedAt: 2025-06-18 17:34:48 -0400 (Wed, 18 Jun 2025) |
| EllapsedTime: 69.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r bcSeq -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data bcSeq ### ############################################################################## ############################################################################## * checking for file 'bcSeq/DESCRIPTION' ... OK * preparing 'bcSeq': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'bcSeq.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "bcSeq.tex" --max-iterations=20' had status 1 Error: processing vignette 'bcSeq.Rnw' failed with diagnostics: running 'texi2dvi' on 'bcSeq.tex' failed LaTeX errors: bcSeq.vrb:18: LaTeX Error: Command \textquotedbl unavailable in encoding OT1. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. ... bcSeq.vrb:18: LaTeX Error: Command \textquotedbl unavailable in encoding OT1. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. ... --- failed re-building 'bcSeq.Rnw' SUMMARY: processing the following file failed: 'bcSeq.Rnw' Error: Vignette re-building failed. Execution halted