##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SeqVarTools.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SeqVarTools_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SeqVarTools.Rcheck'
* using R version 4.5.0 (2025-04-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SeqVarTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SeqVarTools' version '1.47.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SeqVarTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  Iterator-class.Rd: GRanges, GRangesList, DataFrame, SeqVarGDSClass,
    seqSetFilter
  SeqVarData-class.Rd: SeqVarGDSClass, AnnotatedDataFrame,
    seqSetFilter, GRanges, seqVCF2GDS, seqOpen, seqGetData, seqApply,
    seqClose
  SeqVarTools-package.Rd: SeqArray
  allele-methods.Rd: SeqVarGDSClass
  alleleFrequency.Rd: SeqVarGDSClass, seqParallel
  alternateAlleleDetection.Rd: seqSetFilter, SeqVarGDSClass
  applyMethod.Rd: SeqVarGDSClass, seqSetFilter
  chromWithPAR.Rd: SeqVarGDSClass
  countSingletons.Rd: SeqVarGDSClass
  duplicateDiscordance.Rd: seqSetFilter
  getGenotype.Rd: SeqVarGDSClass, seqParallel, Matrix, seqBlockApply,
    seqGetData, seqSetFilter
  getVariableLengthData.Rd: SeqVarGDSClass, seqParallel, seqGetData
  heterozygosity.Rd: SeqVarGDSClass, seqParallel
  hwe.Rd: SeqVarGDSClass, seqParallel, HWExact, GWASExactHW
  imputedDosage.Rd: SeqVarGDSClass
  inbreedCoeff.Rd: SeqVarGDSClass, seqParallel
  isSNV.Rd: SeqVarGDSClass
  isVariant.Rd: SeqVarGDSClass, seqParallel
  meanBySample.Rd: SeqVarGDSClass, seqApply
  mendelErr.Rd: SeqVarGDSClass
  missingGenotypeRate.Rd: SeqVarGDSClass, seqParallel
  pca.Rd: SeqVarGDSClass
  refFrac.Rd: SeqVarGDSClass, seqParallel
  regression.Rd: logistf, seqParallel, seqSetFilter
  setVariantID.Rd: seqVCF2GDS, SeqVarGDSClass
  titv.Rd: SeqVarGDSClass
  variantInfo.Rd: SeqVarGDSClass
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.22-bioc/meat/SeqVarTools.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SeqVarTools
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'SeqVarTools' ...
** this is package 'SeqVarTools' version '1.47.0'
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqVarTools)

R version 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(GenomicRanges)
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
> BiocGenerics:::testPackage("SeqVarTools")
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

# of selected samples: 5
# of selected variants: 5
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 3
# of selected samples: 3
matching samples... 2 pairs identified!
matching variants... 1346 non-overlapping variant matches identified!
# of selected samples: 2
# of selected variants: 1,346
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 2
# of selected variants: 50
# of selected samples: 2
# of selected variants: 51
matching samples... 2 pairs identified!
matching variants... 26 non-overlapping variant matches identified!
# of selected variants: 26
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
File: F:\biocbuild\bbs-3.22-bioc\R\library\SeqArray\extdata\CEU_Exon.gds (287.6K)
+    [  ] *
|--+ description   [  ] *
|--+ sample.id   { Str8 90 LZMA_ra(34.7%), 257B } *
|--+ variant.id   { Int32 1348 LZMA_ra(16.7%), 905B } *
|--+ position   { Int32 1348 LZMA_ra(64.4%), 3.4K } *
|--+ chromosome   { Str8 1348 LZMA_ra(4.39%), 157B } *
|--+ allele   { Str8 1348 LZMA_ra(16.6%), 901B } *
|--+ genotype   [  ] *
|  |--+ data   { Bit2 2x90x1348 LZMA_ra(26.3%), 15.6K } *
|  |--+ ~data   { Bit2 2x1348x90 LZMA_ra(29.2%), 17.3K } *
|  |--+ extra.index   { Int32 3x0 LZMA_ra, 18B } *
|  \--+ extra   { Int16 0 LZMA_ra, 18B }
|--+ phase   [  ]
|  |--+ data   { Bit1 90x1348 LZMA_ra(0.86%), 137B } *
|  |--+ ~data   { Bit1 1348x90 LZMA_ra(0.86%), 137B } *
|  |--+ extra.index   { Int32 3x0 LZMA_ra, 18B } *
|  \--+ extra   { Bit1 0 LZMA_ra, 18B }
|--+ annotation   [  ]
|  |--+ id   { Str8 1348 LZMA_ra(38.3%), 5.5K } *
|  |--+ qual   { Float32 1348 LZMA_ra(2.11%), 121B } *
|  |--+ filter   { Int32,factor 1348 LZMA_ra(2.11%), 121B } *
|  |--+ info   [  ]
|  |  |--+ AA   { Str8 1328 LZMA_ra(22.1%), 593B } *
|  |  |--+ AC   { Int32 1348 LZMA_ra(24.1%), 1.3K } *
|  |  |--+ AN   { Int32 1348 LZMA_ra(19.6%), 1.0K } *
|  |  |--+ DP   { Int32 1348 LZMA_ra(47.7%), 2.5K } *
|  |  |--+ HM2   { Bit1 1348 LZMA_ra(145.6%), 253B } *
|  |  |--+ HM3   { Bit1 1348 LZMA_ra(145.6%), 253B } *
|  |  |--+ OR   { Str8 1348 LZMA_ra(19.6%), 341B } *
|  |  |--+ GP   { Str8 1348 LZMA_ra(24.3%), 3.8K } *
|  |  \--+ BN   { Int32 1348 LZMA_ra(20.7%), 1.1K } *
|  \--+ format   [  ]
|     \--+ DP   [  ] *
|        |--+ data   { VL_Int 90x1348 LZMA_ra(70.8%), 115.2K } *
|        \--+ ~data   { VL_Int 1348x90 LZMA_ra(65.1%), 105.9K } *
\--+ sample.annotation   [  ]
   \--+ family   { Str8 90 LZMA_ra(55.0%), 221B } *
# of selected variants: 142
# of selected samples: 90
# of selected variants: 1,348
# of selected variants: 5
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 5
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 3
# of selected samples: 3
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 2
# of selected variants: 50
# of selected samples: 2
# of selected variants: 51
matching samples... 2 pairs identified!
matching variants... 26 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 26 variant matches identified!
# of selected variants: 26
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 3
# of selected samples: 3
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 1346 variant matches identified!
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 2
# of selected variants: 50
# of selected samples: 2
# of selected variants: 51
matching samples... 2 pairs identified!
matching variants... 26 variant matches identified!
matching samples... 2 pairs identified!
matching variants... 26 variant matches identified!
# of selected variants: 26
Warning in SeqVarTools:::.samplePairs1(samples) :
  More than two samples for subject 4
Selecting first two samples: samp7, samp8
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected variants: 1,346
# of selected variants: 1,330
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 3
# of selected variants: 10
# of selected samples: 3
# of selected samples: 90
# of selected variants: 1,348
# of selected variants: 10
# of selected samples: 3
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
starting worker pid=133700 on localhost:11264 at 06:45:03.394
starting worker pid=4144 on localhost:11264 at 06:45:03.572
starting worker pid=119612 on localhost:11264 at 06:45:03.573
starting worker pid=96432 on localhost:11264 at 06:45:03.643
starting worker pid=58048 on localhost:11264 at 06:45:03.648
starting worker pid=132808 on localhost:11264 at 06:45:03.687
starting worker pid=107492 on localhost:11264 at 06:45:03.699
starting worker pid=121960 on localhost:11264 at 06:45:03.709
starting worker pid=28936 on localhost:11264 at 06:45:03.714
starting worker pid=81972 on localhost:11264 at 06:45:03.732
starting worker pid=60256 on localhost:11264 at 06:45:03.732
starting worker pid=61540 on localhost:11264 at 06:45:03.748
starting worker pid=13216 on localhost:11264 at 06:45:03.754
starting worker pid=76496 on localhost:11264 at 06:45:03.780
starting worker pid=25504 on localhost:11264 at 06:45:03.793
starting worker pid=50976 on localhost:11264 at 06:45:03.804
starting worker pid=79316 on localhost:11264 at 06:45:03.809
starting worker pid=69508 on localhost:11264 at 06:45:03.836
starting worker pid=23152 on localhost:11264 at 06:45:03.847
starting worker pid=49360 on localhost:11264 at 06:45:03.867
starting worker pid=143484 on localhost:11264 at 06:45:03.912
starting worker pid=117960 on localhost:11264 at 06:45:03.921
starting worker pid=93784 on localhost:11264 at 06:45:03.925
starting worker pid=124100 on localhost:11264 at 06:45:03.934
starting worker pid=134284 on localhost:11264 at 06:45:03.965
starting worker pid=37916 on localhost:11264 at 06:45:03.966
starting worker pid=55808 on localhost:11264 at 06:45:03.989
starting worker pid=45312 on localhost:11264 at 06:45:04.031
starting worker pid=35900 on localhost:11264 at 06:45:04.058
starting worker pid=29512 on localhost:11264 at 06:45:04.102
starting worker pid=128388 on localhost:11264 at 06:45:04.126
starting worker pid=21828 on localhost:11264 at 06:45:13.432
starting worker pid=66548 on localhost:11264 at 06:45:13.485
starting worker pid=140068 on localhost:11264 at 06:45:13.487
starting worker pid=24368 on localhost:11264 at 06:45:13.529
starting worker pid=120524 on localhost:11264 at 06:45:13.586
starting worker pid=128844 on localhost:11264 at 06:45:13.616
starting worker pid=64068 on localhost:11264 at 06:45:13.629
starting worker pid=138544 on localhost:11264 at 06:45:13.632
starting worker pid=39184 on localhost:11264 at 06:45:13.653
starting worker pid=128476 on localhost:11264 at 06:45:13.663
starting worker pid=85200 on localhost:11264 at 06:45:13.709
starting worker pid=24356 on localhost:11264 at 06:45:13.792
starting worker pid=91440 on localhost:11264 at 06:45:13.794
starting worker pid=29944 on localhost:11264 at 06:45:13.809
starting worker pid=77652 on localhost:11264 at 06:45:13.812
starting worker pid=93444 on localhost:11264 at 06:45:13.813
starting worker pid=25856 on localhost:11264 at 06:45:13.816
starting worker pid=67904 on localhost:11264 at 06:45:13.818
starting worker pid=53044 on localhost:11264 at 06:45:13.826
starting worker pid=46616 on localhost:11264 at 06:45:13.831
starting worker pid=107252 on localhost:11264 at 06:45:13.834
starting worker pid=79788 on localhost:11264 at 06:45:13.838
starting worker pid=112208 on localhost:11264 at 06:45:13.868
starting worker pid=84960 on localhost:11264 at 06:45:13.896
starting worker pid=29504 on localhost:11264 at 06:45:13.897
starting worker pid=130184 on localhost:11264 at 06:45:13.934
starting worker pid=96400 on localhost:11264 at 06:45:13.961
starting worker pid=104516 on localhost:11264 at 06:45:13.992
starting worker pid=2680 on localhost:11264 at 06:45:13.996
starting worker pid=73156 on localhost:11264 at 06:45:14.038
starting worker pid=35892 on localhost:11264 at 06:45:14.084
starting worker pid=141264 on localhost:11264 at 06:45:30.981
starting worker pid=32156 on localhost:11264 at 06:45:31.009
starting worker pid=132188 on localhost:11264 at 06:45:31.045
starting worker pid=39312 on localhost:11264 at 06:45:31.068
starting worker pid=60460 on localhost:11264 at 06:45:31.112
starting worker pid=139228 on localhost:11264 at 06:45:31.139
starting worker pid=74576 on localhost:11264 at 06:45:31.173
starting worker pid=39704 on localhost:11264 at 06:45:31.176
starting worker pid=143072 on localhost:11264 at 06:45:31.182
starting worker pid=138604 on localhost:11264 at 06:45:31.195
starting worker pid=32876 on localhost:11264 at 06:45:31.201
starting worker pid=86804 on localhost:11264 at 06:45:31.202
starting worker pid=78304 on localhost:11264 at 06:45:31.210
starting worker pid=72344 on localhost:11264 at 06:45:31.222
starting worker pid=72780 on localhost:11264 at 06:45:31.225
starting worker pid=63548 on localhost:11264 at 06:45:31.243
starting worker pid=120372 on localhost:11264 at 06:45:31.264
starting worker pid=11596 on localhost:11264 at 06:45:31.277
starting worker pid=50660 on localhost:11264 at 06:45:31.284
starting worker pid=85548 on localhost:11264 at 06:45:31.298
starting worker pid=15636 on localhost:11264 at 06:45:31.303
starting worker pid=70704 on localhost:11264 at 06:45:31.320
starting worker pid=50212 on localhost:11264 at 06:45:31.331
starting worker pid=2492 on localhost:11264 at 06:45:31.331
starting worker pid=87988 on localhost:11264 at 06:45:31.352
starting worker pid=50956 on localhost:11264 at 06:45:31.352
starting worker pid=120124 on localhost:11264 at 06:45:31.366
starting worker pid=80676 on localhost:11264 at 06:45:31.411
starting worker pid=23316 on localhost:11264 at 06:45:31.435
starting worker pid=132588 on localhost:11264 at 06:45:31.453
starting worker pid=142872 on localhost:11264 at 06:45:31.546
starting worker pid=69732 on localhost:11264 at 06:45:40.404
starting worker pid=105696 on localhost:11264 at 06:45:40.501
starting worker pid=143432 on localhost:11264 at 06:45:40.515
starting worker pid=73260 on localhost:11264 at 06:45:40.564
starting worker pid=124140 on localhost:11264 at 06:45:40.570
starting worker pid=68660 on localhost:11264 at 06:45:40.583
starting worker pid=141392 on localhost:11264 at 06:45:40.586
starting worker pid=49472 on localhost:11264 at 06:45:40.595
starting worker pid=64028 on localhost:11264 at 06:45:40.602
starting worker pid=91328 on localhost:11264 at 06:45:40.615
starting worker pid=88192 on localhost:11264 at 06:45:40.619
starting worker pid=73788 on localhost:11264 at 06:45:40.620
starting worker pid=41120 on localhost:11264 at 06:45:40.666
starting worker pid=49744 on localhost:11264 at 06:45:40.672
starting worker pid=2824 on localhost:11264 at 06:45:40.676
starting worker pid=100692 on localhost:11264 at 06:45:40.710
starting worker pid=33304 on localhost:11264 at 06:45:40.712
starting worker pid=63064 on localhost:11264 at 06:45:40.718
starting worker pid=69068 on localhost:11264 at 06:45:40.726
starting worker pid=23756 on localhost:11264 at 06:45:40.732
starting worker pid=40936 on localhost:11264 at 06:45:40.735
starting worker pid=106220 on localhost:11264 at 06:45:40.740
starting worker pid=31340 on localhost:11264 at 06:45:40.741
starting worker pid=111436 on localhost:11264 at 06:45:40.749
starting worker pid=131908 on localhost:11264 at 06:45:40.768
starting worker pid=29444 on localhost:11264 at 06:45:40.774
starting worker pid=76512 on localhost:11264 at 06:45:40.789
starting worker pid=131836 on localhost:11264 at 06:45:40.794
starting worker pid=52856 on localhost:11264 at 06:45:40.795
starting worker pid=118212 on localhost:11264 at 06:45:40.813
starting worker pid=10324 on localhost:11264 at 06:45:40.940
starting worker pid=126116 on localhost:11264 at 06:45:56.885
starting worker pid=65520 on localhost:11264 at 06:45:56.900
starting worker pid=79880 on localhost:11264 at 06:45:56.929
starting worker pid=88256 on localhost:11264 at 06:45:56.932
starting worker pid=41488 on localhost:11264 at 06:45:56.953
starting worker pid=30396 on localhost:11264 at 06:45:56.962
starting worker pid=5972 on localhost:11264 at 06:45:56.974
starting worker pid=42172 on localhost:11264 at 06:45:56.996
starting worker pid=93416 on localhost:11264 at 06:45:57.024
starting worker pid=34584 on localhost:11264 at 06:45:57.034
starting worker pid=42656 on localhost:11264 at 06:45:57.047
starting worker pid=122240 on localhost:11264 at 06:45:57.051
starting worker pid=95864 on localhost:11264 at 06:45:57.054
starting worker pid=118428 on localhost:11264 at 06:45:57.139
starting worker pid=53396 on localhost:11264 at 06:45:57.145
starting worker pid=102692 on localhost:11264 at 06:45:57.161
starting worker pid=89192 on localhost:11264 at 06:45:57.178
starting worker pid=51352 on localhost:11264 at 06:45:57.209
starting worker pid=98692 on localhost:11264 at 06:45:57.209
starting worker pid=118280 on localhost:11264 at 06:45:57.213
starting worker pid=118488 on localhost:11264 at 06:45:57.214
starting worker pid=136892 on localhost:11264 at 06:45:57.215
starting worker pid=110004 on localhost:11264 at 06:45:57.219
starting worker pid=46484 on localhost:11264 at 06:45:57.226
starting worker pid=38284 on localhost:11264 at 06:45:57.246
starting worker pid=116788 on localhost:11264 at 06:45:57.251
starting worker pid=29000 on localhost:11264 at 06:45:57.255
starting worker pid=133632 on localhost:11264 at 06:45:57.256
starting worker pid=111336 on localhost:11264 at 06:45:57.266
starting worker pid=15032 on localhost:11264 at 06:45:57.314
starting worker pid=130096 on localhost:11264 at 06:45:57.317
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected variants: 903
# of selected samples: 59
# of selected samples: 58
# of selected samples: 32
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 5
# of selected variants: 10
# of selected samples: 90
# of selected variants: 1,348
# of selected samples: 5
# of selected variants: 10
# of selected samples: 10
# of selected samples: 10
# of selected variants: 10
# of selected samples: 10


RUNIT TEST PROTOCOL -- Thu Jun 19 06:46:19 2025 
*********************************************** 
Number of test functions: 152 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
SeqVarTools RUnit Tests - 152 test functions, 0 errors, 0 failures
Number of test functions: 152 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  26.57    2.40   99.42