Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-14 12:07 -0400 (Thu, 14 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4535 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2119/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SVMDO 1.9.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SVMDO |
Version: 1.9.0 |
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SVMDO_1.9.0.tar.gz |
StartedAt: 2025-08-14 07:13:56 -0400 (Thu, 14 Aug 2025) |
EndedAt: 2025-08-14 07:21:03 -0400 (Thu, 14 Aug 2025) |
EllapsedTime: 426.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SVMDO.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings SVMDO_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/SVMDO.Rcheck' * using R version 4.5.1 (2025-06-13 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'SVMDO/DESCRIPTION' ... OK * this is package 'SVMDO' version '1.9.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SVMDO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.9.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(SVMDO) Loading required package: shiny > > test_check("SVMDO") 'select()' returned 1:1 mapping between keys and columns --> No gene can be mapped.... --> Expected input gene ID: 1593,112817,3795,652,116228,5443 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1798,4000,26175,5799,6445,56606 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4915,840,10891,89874,10157,3651 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3091,26191,15,3779,5288,3034 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10269,89874,55630,6401,358,50943 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 27249,3759,2243,10269,2115,10382 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5629,26354,2653,2158,1489,3991 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 8243,1645,3157,8504,7052,351 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 338328,83693,1186,6579,11136,79644 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 43,10577,1277,348,4656,92483 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7319,27344,1644,23543,4544,3728 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 8675,10724,6927,9868,2118,338 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3101,150,1281,4942,51738,2152 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55532,8675,3710,6834,5595,8431 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1373,51082,7355,3710,5406,6938 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2878,2932,10000,5745,6262,7351 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10159,217,51604,3643,2992,54476 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4669,5728,6775,3304,2110,53346 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1393,1200,1650,29929,5442,6576 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4524,5805,3600,4973,10667,2947 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5468,5175,51,54331,6513,1558 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10965,80222,90865,153,1186,1339 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 43,6248,27344,406937,1369,64900 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2647,1757,4982,2693,105372280,154 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 185,4852,100303755,3416,2998,283459 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 80331,5230,175,388753,4760,5257 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2677,338328,4015,407006,54896,9698 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5967,55967,10841,493,22852,200539 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5798,128486,56729,7252,5184,551 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2170,1056,9445,844,27089,79585 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 487,4306,2157,9968,2876,26175 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 80207,1394,6928,3988,57215,54805 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6519,959,64116,11093,57048,388585 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 87178,81704,10667,54539,54578,11213 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1182,537,29960,10537,4714,152078 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4712,1789,6999,3992,5444,5264 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6579,353,3480,156,11095,2653 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55005,1393,6890,7019,10059,5654 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 23291,9054,3638,7879,5644,84833 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4286,9779,4899,5901,23654,3952 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2697,6261,6929,22797,1581,10577 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3123,8560,8879,2115,11213,407045 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7879,285848,3240,4543,1843,496 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 23410,7276,84447,6897,462,200205 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6584,56729,6554,2890,1027,10382 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5230,7388,5295,9572,1649,5442 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1889,5313,2119,840,5068,8813 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 486,6387,593,79587,3931,4842 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4312,199,1728,10352,729238,4878 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5092,338328,50674,3034,2646,51548 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1890,2896,113235,875,6383,325 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 100303755,2992,2760,1374,9409,51176 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5211,91647,5313,6556,51738,35 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2790,2235,2538,3074,6531,8743 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4286,83985,57761,2948,4915,123099 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6382,867,5270,4126,10991,284184 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5594,1591,54931,50507,6519,7287 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 203068,1806,5445,5207,10580,54549 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3119,3553,5350,6329,91647,111240474 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6492,1889,6714,6550,1232,5367 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5644,5327,92935,10352,105372280,57001 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1374,795,6391,7409,221458,9572 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1607,539,1641,1737,3779,1028 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5617,7841,55818,27429,3899,5581 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 283120,54798,6550,249,10991,124976 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5330,5250,406937,1277,582,7297 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 9997,121268,567,10644,7297,57761 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3990,2903,84705,5265,8842,51555 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 56997,2548,801,2146,4967,51082 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 23590,1537,6536,496,22978,55278 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4728,65993,5901,4852,79949,133 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 790,2787,407004,55331,4544,2731 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 201595,6565,84701,3242,56302,6714 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 22868,7390,100128525,728294,145264,599 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 57511,100131801,5160,5175,2992,10 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 558,2280,4233,326625,54549,941 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 51422,203,5167,53345,4286,26060 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6347,2688,87178,5971,5727,10020 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2688,5256,196385,22820,8665,4548 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 582,1361,10667,434,53632,3958 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3783,7407,336,2678,471,3250 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10019,3030,10250,189,3351,3032 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 30061,9692,348,3458,64788,4780 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4716,2588,4306,3958,7422,9365 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 79068,5288,51608,55343,2778,2992 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3598,3645,2739,80224,53632,123283 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6774,652,5080,3101,9560,7076 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3953,122961,2200,1351,6403,79633 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 51601,3081,94235,10580,2805,5805 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4358,9560,6261,4887,6342,330 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3293,6550,2702,6833,64801,8567 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5052,57001,5967,846,5054,407045 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2157,585,239,54205,84340,2820 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3155,64689,8651,640,26088,2793 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 11132,2335,2694,842,4790,593 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10682,132,54552,6720,9507,5250 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7038,9104,1906,353,7450,253559 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3630,56999,80267,64788,23410,5860 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 590,2161,7431,846,2903,6199 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3382,116085,8799,7124,142,35 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 79644,1585,6579,9370,5743,4144 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6649,563,55343,57128,1149,133522 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 640,1717,1435,283120,6714,107075310 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 81034,26003,407021,79731,4694,79133 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 107075310,3329,10128,2592,2152,941 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 445,509,275,28976,55937,2108 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4860,2998,6906,388585,491,6319 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1491,728294,9420,55753,9445,5825 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5792,5741,7941,7389,10682,23175 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3290,64432,9672,4683,64689,389 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7048,1806,7389,25828,6263,6908 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55034,10383,4144,7057,1571,9091 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 664,1346,2767,6356,5009,840 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2952,23291,383,2717,2524,8243 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 339,3030,55572,5161,57104,8659 --> return NULL... [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 134.76 3.03 138.40
SVMDO.Rcheck/SVMDO-Ex.timings
name | user | system | elapsed | |
runGUI | 0.57 | 0.11 | 1.47 | |