Multiple platform build/check report for BioC 3.22 - BUILD results for SPONGE on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4553
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SPONGE on palomino8

To the developers/maintainers of the SPONGE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SPONGE

Version: 1.31.0

Command: chmod a+r SPONGE -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SPONGE

StartedAt: 2025-08-08 22:25:20 -0400 (Fri, 08 Aug 2025)

EndedAt: 2025-08-08 22:28:57 -0400 (Fri, 08 Aug 2025)

EllapsedTime: 217.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r SPONGE -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SPONGE
###
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* checking for file 'SPONGE/DESCRIPTION' ... OK
* preparing 'SPONGE':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'SPONGE.Rmd' using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "SPONGE vignette", and the latter is "Sparse Partial correlation ON Gene Expression with SPONGE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building 'SPONGE.Rmd'

--- re-building 'spongEffects.Rmd' using rmarkdown

Quitting from spongEffects.Rmd:264-272 [unnamed-chunk-25]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
---
Backtrace:
    ▆
 1. └─SPONGE::plot_involved_miRNAs_to_modules(...)
 2.   ├─biomaRt::useDataset(bioMart_gene_ensembl, useMart("ensembl"))
 3.   └─biomaRt::useMart("ensembl")
 4.     └─biomaRt:::.useMart(...)
 5.       └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spongEffects.Rmd' failed with diagnostics:
Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building 'spongEffects.Rmd'

SUMMARY: processing the following file failed:
  'spongEffects.Rmd'

Error: Vignette re-building failed.
Execution halted