Mike Smith
| Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/Rhdf5lib |
| git_branch: devel |
| git_last_commit: 6d5ed7f |
| git_last_commit_date: 2025-04-15 11:11:59 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:04 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1753/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rhdf5lib 1.31.0 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the Rhdf5lib package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rhdf5lib.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rhdf5lib |
| Version: 1.31.0 |
| Command: rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.31.0.tar.gz |
| StartedAt: 2025-06-19 09:55:21 -0400 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 09:56:11 -0400 (Thu, 19 Jun 2025) |
| EllapsedTime: 50.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Rhdf5lib_1.31.0.zip |
| PackageFileSize: 6.245 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Rhdf5lib.buildbin-libdir && mkdir Rhdf5lib.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Rhdf5lib.buildbin-libdir Rhdf5lib_1.31.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Rhdf5lib' ... ** this is package 'Rhdf5lib' version '1.31.0' ** using staged installation untarring hdf5_headers_1.10.7.tar.gz ... ** libs using C compiler: 'gcc.exe (GCC) 14.2.0' mkdir -p "F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt" "F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" "F:/biocbuild/bbs-3.22-bioc/R/bin/x64/Rscript.exe" "../tools/copy_hdf5_files.R" "F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt" "F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" Copying libraries Copying headers Done "F:/biocbuild/bbs-3.22-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" "F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt" Copying libcurl etc gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -I"F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c Rhdf5lib.c -o Rhdf5lib.o gcc -shared -s -static-libgcc -o Rhdf5lib.dll tmp.def Rhdf5lib.o F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libhdf5.a F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libsz.a F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/x64-ucrt/libaec.a -lpsapi -lz -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.22-bioc/meat/Rhdf5lib.buildbin-libdir/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Rhdf5lib' as Rhdf5lib_1.31.0.zip * DONE (Rhdf5lib)