Multiple platform build/check report for BioC 3.22 - INSTALL results for Repitools on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for Repitools on kjohnson3

To the developers/maintainers of the Repitools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Repitools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Repitools

Version: 1.55.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Repitools

StartedAt: 2025-06-18 15:17:26 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 15:17:27 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 1.2 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Repitools
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘Repitools’ ...
** this is package ‘Repitools’ version ‘1.55.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c const.c -o const.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -D R_NO_REMAP -I. -fPIC  -falign-functions=64 -Wall -g -O2  -c hyp2f1.c -o hyp2f1.o
hyp2f1.c:126:16: error: unknown type name 'a'
double hyp2f1( a, b, c, x )
               ^
hyp2f1.c:126:19: error: unknown type name 'b'
double hyp2f1( a, b, c, x )
                  ^
hyp2f1.c:126:22: error: unknown type name 'c'
double hyp2f1( a, b, c, x )
                     ^
hyp2f1.c:126:25: error: unknown type name 'x'
double hyp2f1( a, b, c, x )
                        ^
hyp2f1.c:126:28: error: expected ';' after top level declarator
double hyp2f1( a, b, c, x )
                           ^
                           ;
hyp2f1.c:128:1: error: expected identifier or '('
{
^
hyp2f1.c:294:17: error: unknown type name 'a'
 double hyt2f1( a, b, c, x, loss )
                ^
hyp2f1.c:294:20: error: unknown type name 'b'
 double hyt2f1( a, b, c, x, loss )
                   ^
hyp2f1.c:294:23: error: unknown type name 'c'
 double hyt2f1( a, b, c, x, loss )
                      ^
hyp2f1.c:294:26: error: unknown type name 'x'
 double hyt2f1( a, b, c, x, loss )
                         ^
hyp2f1.c:294:29: error: unknown type name 'loss'
 double hyt2f1( a, b, c, x, loss )
                            ^
hyp2f1.c:294:35: error: expected ';' after top level declarator
 double hyt2f1( a, b, c, x, loss )
                                  ^
                                  ;
hyp2f1.c:297:1: error: expected identifier or '('
{
^
hyp2f1.c:438:17: error: unknown type name 'a'
 double hys2f1( a, b, c, x, loss )
                ^
hyp2f1.c:438:20: error: unknown type name 'b'
 double hys2f1( a, b, c, x, loss )
                   ^
hyp2f1.c:438:23: error: unknown type name 'c'
 double hys2f1( a, b, c, x, loss )
                      ^
hyp2f1.c:438:26: error: unknown type name 'x'
 double hys2f1( a, b, c, x, loss )
                         ^
hyp2f1.c:438:29: error: unknown type name 'loss'
 double hys2f1( a, b, c, x, loss )
                            ^
hyp2f1.c:438:35: error: expected ';' after top level declarator
 double hys2f1( a, b, c, x, loss )
                                  ^
                                  ;
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [hyp2f1.o] Error 1
ERROR: compilation failed for package ‘Repitools’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Repitools’