Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:10 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1737/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RESOLVE 1.11.1 (landing page) Luca De Sano
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the RESOLVE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RESOLVE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RESOLVE |
Version: 1.11.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.11.1.tar.gz |
StartedAt: 2025-08-08 21:10:57 -0400 (Fri, 08 Aug 2025) |
EndedAt: 2025-08-08 21:17:03 -0400 (Fri, 08 Aug 2025) |
EllapsedTime: 366.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RESOLVE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.11.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/RESOLVE.Rcheck’ * using R version 4.5.1 Patched (2025-06-14 r88325) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 16.0.0 (clang-1600.0.26.6) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RESOLVE/DESCRIPTION’ ... OK * this is package ‘RESOLVE’ version ‘1.11.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RESOLVE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed signaturesSignificance 59.718 0.063 59.860 signaturesCV 47.234 0.095 49.027 signaturesDecomposition 33.794 0.040 33.842 signaturesAssignment 17.698 0.023 17.729 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RESOLVE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘RESOLVE’ ... ** this is package ‘RESOLVE’ version ‘1.11.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RESOLVE)
RESOLVE.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library("testthat") > library("RESOLVE") > > test_check("RESOLVE") [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] > > proc.time() user system elapsed 88.429 0.464 89.366
RESOLVE.Rcheck/RESOLVE-Ex.timings
name | user | system | elapsed | |
associationAlterations | 0.233 | 0.013 | 0.246 | |
associationPrognosis | 0.065 | 0.002 | 0.068 | |
associationSignatures | 0.423 | 0.013 | 0.443 | |
getCNCounts | 0.005 | 0.001 | 0.006 | |
getIDCounts | 1.668 | 0.107 | 1.844 | |
getMNVCounts | 4.150 | 0.016 | 4.168 | |
getSBSCounts | 0.394 | 0.247 | 1.850 | |
groupsCNPlot | 0.790 | 0.009 | 0.803 | |
groupsCXPlot | 0.505 | 0.008 | 0.514 | |
groupsIDPlot | 1.173 | 0.009 | 1.185 | |
groupsMNVPlot | 1.080 | 0.072 | 1.153 | |
groupsSBSPlot | 0.995 | 0.027 | 1.021 | |
patientsCNPlot | 0.382 | 0.002 | 0.385 | |
patientsCXPlot | 0.188 | 0.001 | 0.190 | |
patientsIDPlot | 0.570 | 0.002 | 0.580 | |
patientsMNVPlot | 0.382 | 0.002 | 0.388 | |
patientsSBSPlot | 0.262 | 0.002 | 0.266 | |
signaturesAssignment | 17.698 | 0.023 | 17.729 | |
signaturesCNPlot | 0.507 | 0.018 | 0.525 | |
signaturesCV | 47.234 | 0.095 | 49.027 | |
signaturesCXPlot | 0.258 | 0.008 | 0.265 | |
signaturesClustering | 3.870 | 0.060 | 3.933 | |
signaturesDecomposition | 33.794 | 0.040 | 33.842 | |
signaturesIDPlot | 0.810 | 0.026 | 0.843 | |
signaturesMNVPlot | 0.518 | 0.002 | 0.522 | |
signaturesSBSPlot | 0.354 | 0.003 | 0.358 | |
signaturesSignificance | 59.718 | 0.063 | 59.860 | |