| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-04-09 11:55 -0400 (Wed, 09 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" | 4737 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" | 4524 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1439/2335 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Hao Feng
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the NeuCA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NeuCA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: NeuCA |
| Version: 1.13.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 NeuCA |
| StartedAt: 2025-04-08 18:27:46 -0400 (Tue, 08 Apr 2025) |
| EndedAt: 2025-04-08 18:28:50 -0400 (Tue, 08 Apr 2025) |
| EllapsedTime: 64.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 NeuCA
###
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* checking for file ‘NeuCA/DESCRIPTION’ ... OK
* preparing ‘NeuCA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘NeuCA.Rmd’ using rmarkdown
Quitting from NeuCA.Rmd:75-80 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/usr/bin/python3.12
Python exception encountered:
Traceback (most recent call last):
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
^^^^^^^^^^^^^^^^^^^^^^
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
^^^^^^
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'tensorflow'
You can install TensorFlow using the install_tensorflow() function.
---
Backtrace:
▆
1. ├─NeuCA::NeuCA(...)
2. │ └─NeuCA:::BigNN(...)
3. │ └─... %>% ...
4. ├─generics::compile(...)
5. ├─keras::layer_dense(., units = nClass, activation = last_act)
6. │ ├─keras::create_layer(...)
7. │ ├─keras$layers
8. │ └─reticulate:::`$.python.builtin.module`(keras, "layers")
9. │ └─reticulate::py_get_attr(x, name, TRUE)
10. └─reticulate (local) `<fn>`(`<python.builtin.module>`)
11. └─keras (local) on_error(result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'NeuCA.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/usr/bin/python3.12
Python exception encountered:
Traceback (most recent call last):
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
^^^^^^^^^^^^^^^^^^^^^^
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
^^^^^^
File "/home/biocbuild/bbs-3.22-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'tensorflow'
You can install TensorFlow using the install_tensorflow() function.
--- failed re-building ‘NeuCA.Rmd’
SUMMARY: processing the following file failed:
‘NeuCA.Rmd’
Error: Vignette re-building failed.
Execution halted