| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root"
| 4514 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
| 4361 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root"
| 1031 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"
| 4491 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
| 4496 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
BUILD results for MultiAssayExperiment on lconway
To the developers/maintainers of the MultiAssayExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiAssayExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
|
raw results
Summary
Command output
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MultiAssayExperiment
###
##############################################################################
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* checking for file ‘MultiAssayExperiment/DESCRIPTION’ ... OK
* preparing ‘MultiAssayExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MultiAssayExperiment.Rmd’ using rmarkdown
Quitting from MultiAssayExperiment.Rmd:954-956 [unnamed-chunk-66]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! To use this function, install missing package dependencies.
---
Backtrace:
▆
1. ├─BiocGenerics::longForm(myMultiAssay[, , 1:2])
2. └─MultiAssayExperiment::longForm(myMultiAssay[, , 1:2])
3. └─MultiAssayExperiment (local) .local(object, ...)
4. ├─BiocGenerics::longForm(experiments(object), i = i)
5. └─MultiAssayExperiment::longForm(experiments(object), i = i)
6. └─MultiAssayExperiment (local) .local(object, ...)
7. └─BiocGenerics::mapply(...)
8. ├─BiocGenerics (local) standardGeneric("mapply")
9. │ ├─BiocGenerics::eval(mc, env)
10. │ └─base::eval(mc, env)
11. │ └─base::eval(mc, env)
12. └─base::mapply(FUN = FUN, ..., SIMPLIFY = SIMPLIFY)
13. └─MultiAssayExperiment (local) `<fn>`(obj = dots[[1L]][[1L]], obname = dots[[2L]][[1L]], idx = dots[[3L]][[1L]])
14. ├─base::data.frame(assay = obname, longForm(obj, i = idx), stringsAsFactors = FALSE)
15. ├─BiocGenerics::longForm(obj, i = idx)
16. └─MultiAssayExperiment::longForm(obj, i = idx)
17. └─MultiAssayExperiment (local) .local(object, ...)
18. └─BiocBaseUtils::checkInstalled("reshape2")
19. └─BiocBaseUtils:::.install_suggestion(toinst)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MultiAssayExperiment.Rmd' failed with diagnostics:
To use this function, install missing package dependencies.
--- failed re-building ‘MultiAssayExperiment.Rmd’
--- re-building ‘MultiAssayExperiment_cheatsheet.Rmd’ using rmarkdown
--- finished re-building ‘MultiAssayExperiment_cheatsheet.Rmd’
--- re-building ‘QuickStartMultiAssay.Rmd’ using rmarkdown
Quitting from QuickStartMultiAssay.Rmd:288-293 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! To use this function, install missing package dependencies.
---
Backtrace:
▆
1. ├─BiocGenerics::longForm(...)
2. └─MultiAssayExperiment::longForm(...)
3. └─MultiAssayExperiment (local) .local(object, ...)
4. ├─BiocGenerics::longForm(experiments(object), i = i)
5. └─MultiAssayExperiment::longForm(experiments(object), i = i)
6. └─MultiAssayExperiment (local) .local(object, ...)
7. └─BiocGenerics::mapply(...)
8. ├─BiocGenerics (local) standardGeneric("mapply")
9. │ ├─BiocGenerics::eval(mc, env)
10. │ └─base::eval(mc, env)
11. │ └─base::eval(mc, env)
12. └─base::mapply(FUN = FUN, ..., SIMPLIFY = SIMPLIFY)
13. └─MultiAssayExperiment (local) `<fn>`(obj = dots[[1L]][[1L]], obname = dots[[2L]][[1L]], idx = dots[[3L]][[1L]])
14. ├─base::data.frame(assay = obname, longForm(obj, i = idx), stringsAsFactors = FALSE)
15. ├─BiocGenerics::longForm(obj, i = idx)
16. └─MultiAssayExperiment::longForm(obj, i = idx)
17. └─MultiAssayExperiment (local) .local(object, ...)
18. └─BiocBaseUtils::checkInstalled("reshape2")
19. └─BiocBaseUtils:::.install_suggestion(toinst)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'QuickStartMultiAssay.Rmd' failed with diagnostics:
To use this function, install missing package dependencies.
--- failed re-building ‘QuickStartMultiAssay.Rmd’
--- re-building ‘UsingHDF5Array.Rmd’ using rmarkdown
--- finished re-building ‘UsingHDF5Array.Rmd’
SUMMARY: processing the following files failed:
‘MultiAssayExperiment.Rmd’ ‘QuickStartMultiAssay.Rmd’
Error: Vignette re-building failed.
Execution halted
