Multiple platform build/check report for BioC 3.22 - BUILD results for Macarron on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for Macarron on nebbiolo2

To the developers/maintainers of the Macarron package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Macarron.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Macarron

Version: 1.13.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Macarron

StartedAt: 2025-06-18 18:09:07 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 18:10:54 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 107.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Macarron
###
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* checking for file ‘Macarron/DESCRIPTION’ ... OK
* preparing ‘Macarron’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Macarron.Rmd’ using rmarkdown

Quitting from Macarron.Rmd:92-106 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': invalid 'n' - must contain at least one non-missing element, got none.
---
Backtrace:
     ▆
  1. ├─Macarron::Macarron(...)
  2. │ └─Macarron::showBest(...)
  3. │   ├─BiocGenerics::as.data.frame(...)
  4. │   ├─base::do.call(rbind, lapply(test.phenotypes, digest.each))
  5. │   └─base::lapply(test.phenotypes, digest.each)
  6. │     └─Macarron (local) FUN(X[[i]], ...)
  7. │       ├─utils::head(...)
  8. │       └─utils (local) head.data.frame(...)
  9. │         └─utils::.checkHT(n, d <- dim(x))
 10. │           └─base::stop(simpleError(msg, call = sys.call(-1L)))
 11. └─base (local) `<fn>`(`<smplErrr>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Macarron.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': invalid 'n' - must contain at least one non-missing element, got none.
--- failed re-building ‘Macarron.Rmd’

SUMMARY: processing the following file failed:
  ‘Macarron.Rmd’

Error: Vignette re-building failed.
Execution halted