Carlos Catania
| Snapshot Date: 2025-06-18 13:25 -0400 (Wed, 18 Jun 2025) |
| git_url: https://git.bioconductor.org/packages/GSgalgoR |
| git_branch: devel |
| git_last_commit: af6c5d0 |
| git_last_commit_date: 2025-04-15 12:14:49 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-06-19 12:06 -0400 (Thu, 19 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4810 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six" | 4548 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six" | 4528 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 921/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GSgalgoR 1.19.0 (landing page) Carlos Catania
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the GSgalgoR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSgalgoR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: GSgalgoR |
| Version: 1.19.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSgalgoR |
| StartedAt: 2025-06-17 00:00:46 -0000 (Tue, 17 Jun 2025) |
| EndedAt: 2025-06-17 00:02:26 -0000 (Tue, 17 Jun 2025) |
| EllapsedTime: 100.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSgalgoR
###
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* checking for file ‘GSgalgoR/DESCRIPTION’ ... OK
* preparing ‘GSgalgoR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GSgalgoR.rmd’ using rmarkdown
--- finished re-building ‘GSgalgoR.rmd’
--- re-building ‘GSgalgoR_callbacks.rmd’ using rmarkdown
Quitting from GSgalgoR_callbacks.rmd:183-199 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sample.int()`:
! NA in probability vector
---
Backtrace:
▆
1. └─GSgalgoR::galgo(...)
2. └─GSgalgoR:::offsprings(X1, chrom_length, population, TournamentSize)
3. └─GSgalgoR:::asymetric_mutation(off1)
4. └─base::sample(...)
5. └─base::sample.int(length(x), size, replace, prob)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GSgalgoR_callbacks.rmd' failed with diagnostics:
NA in probability vector
--- failed re-building ‘GSgalgoR_callbacks.rmd’
SUMMARY: processing the following file failed:
‘GSgalgoR_callbacks.rmd’
Error: Vignette re-building failed.
Execution halted