| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-06-20 12:05 -0400 (Fri, 20 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4514 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4361 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 1031 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4491 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4496 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 351/2309 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChromSCape 1.19.0 (landing page) Pacome Prompsy
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
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To the developers/maintainers of the ChromSCape package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChromSCape.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ChromSCape |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ChromSCape |
| StartedAt: 2025-06-19 16:06:23 -0400 (Thu, 19 Jun 2025) |
| EndedAt: 2025-06-19 16:06:30 -0400 (Thu, 19 Jun 2025) |
| EllapsedTime: 6.7 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ChromSCape
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
ERROR: dependencies ‘colourpicker’, ‘shinyjs’, ‘shinyFiles’, ‘shinyhelper’, ‘shinyWidgets’, ‘shinydashboardPlus’, ‘shinycssloaders’, ‘plotly’, ‘shinydashboard’, ‘colorRamps’, ‘kableExtra’, ‘viridis’, ‘batchelor’, ‘ggplot2’, ‘ggrepel’, ‘gggenes’, ‘gridExtra’, ‘qualV’, ‘qs’, ‘DT’, ‘scran’, ‘scater’, ‘Rtsne’, ‘irlba’, ‘rlist’, ‘umap’, ‘edgeR’, ‘msigdbr’, ‘forcats’, ‘coop’, ‘matrixTests’ are not available for package ‘ChromSCape’
Perhaps try a variation of:
install.packages(c('colourpicker', 'shinyjs', 'shinyFiles', 'shinyhelper', 'shinyWidgets', 'shinydashboardPlus', 'shinycssloaders', 'plotly', 'shinydashboard', 'colorRamps', 'kableExtra', 'viridis', 'batchelor', 'ggplot2', 'ggrepel', 'gggenes', 'gridExtra', 'qualV', 'qs', 'DT', 'scran', 'scater', 'Rtsne', 'irlba', 'rlist', 'umap', 'edgeR', 'msigdbr', 'forcats', 'coop', 'matrixTests'))
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/ChromSCape’