Multiple platform build/check report for BioC 3.22 - BUILD results for CPSM on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4810
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4548
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4528
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4493
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for CPSM on nebbiolo2

To the developers/maintainers of the CPSM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CPSM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CPSM

Version: 1.1.2

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CPSM

StartedAt: 2025-06-18 17:03:54 -0400 (Wed, 18 Jun 2025)

EndedAt: 2025-06-18 17:05:14 -0400 (Wed, 18 Jun 2025)

EllapsedTime: 80.1 seconds

RetCode: 0

Status: OK

PackageFile: CPSM_1.1.2.tar.gz

PackageFileSize: 4.321 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CPSM
###
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* checking for file ‘CPSM/DESCRIPTION’ ... OK
* preparing ‘CPSM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘CPSM/data/Example_TCGA_LGG_FPKM_data.rda’
    ‘CPSM/data/Key_Clin_feature_list.rda’
    ‘CPSM/data/Key_Clin_features_with_PI_list.rda’
    ‘CPSM/data/Key_PI_list.rda’
    ‘CPSM/data/Key_univariate_features_list.rda’
    ‘CPSM/data/Key_univariate_features_with_Clin_list.rda’
    ‘CPSM/data/New_data.rda’ ‘CPSM/data/Test_Clin.rda’
    ‘CPSM/data/Test_Norm_data.rda’ ‘CPSM/data/Test_PI_data.rda’
    ‘CPSM/data/Test_Uni_sig_data.rda’ ‘CPSM/data/Test_results.rda’
    ‘CPSM/data/Train_Clin.rda’ ‘CPSM/data/Train_Data_Nomogram_input.rda’
    ‘CPSM/data/Train_Norm_data.rda’ ‘CPSM/data/Train_PI_data.rda’
    ‘CPSM/data/Train_Uni_sig_data.rda’ ‘CPSM/data/Train_results.rda’
    ‘CPSM/data/feature_list_for_Nomogram.rda’
    ‘CPSM/data/mean_median_survival_time_data.rda’
    ‘CPSM/data/survCurves_data.rda’ ‘CPSM/data/test_FPKM.rda’
    ‘CPSM/data/train_FPKM.rda’
* adding MD5 file
* building ‘CPSM_1.1.2.tar.gz’