Back to Multiple platform build/check report for BioC 3.22:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-04-09 11:55 -0400 (Wed, 09 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six" 4737
palomino8Windows Server 2022 Datacenterx644.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six" 4524
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 286/2335HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CBEA 1.7.1  (landing page)
Quang Nguyen
Snapshot Date: 2025-04-08 13:00 -0400 (Tue, 08 Apr 2025)
git_url: https://git.bioconductor.org/packages/CBEA
git_branch: devel
git_last_commit: 9c7dd88
git_last_commit_date: 2025-01-24 13:50:14 -0400 (Fri, 24 Jan 2025)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for CBEA on nebbiolo2

To the developers/maintainers of the CBEA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CBEA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CBEA
Version: 1.7.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CBEA
StartedAt: 2025-04-08 16:35:08 -0400 (Tue, 08 Apr 2025)
EndedAt: 2025-04-08 16:36:08 -0400 (Tue, 08 Apr 2025)
EllapsedTime: 60.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CBEA
###
##############################################################################
##############################################################################


* checking for file ‘CBEA/DESCRIPTION’ ... OK
* preparing ‘CBEA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘basic_usage.Rmd’ using rmarkdown

Quitting from basic_usage.Rmd:206-206
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `s[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─RefManageR::Citep(bib[["BiocSet"]])
 2. │ └─RefManageR::Cite(...)
 3. ├─bib[["BiocSet"]]
 4. └─utils:::`[[.bibentry`(bib, "BiocSet")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘basic_usage.Rmd’

SUMMARY: processing the following file failed:
  ‘basic_usage.Rmd’

Error: Vignette re-building failed.
Execution halted