Multiple platform build/check report for BioC 3.22 - BUILD results for AneuFinder on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six"	4737
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six"	4524
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for AneuFinder on nebbiolo2

To the developers/maintainers of the AneuFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: AneuFinder

Version: 1.35.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AneuFinder

StartedAt: 2025-04-08 16:13:46 -0400 (Tue, 08 Apr 2025)

EndedAt: 2025-04-08 16:13:48 -0400 (Tue, 08 Apr 2025)

EllapsedTime: 2.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AneuFinder
###
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* checking for file ‘AneuFinder/DESCRIPTION’ ... OK
* preparing ‘AneuFinder’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘AneuFinder’ ...
** this is package ‘AneuFinder’ version ‘1.35.1’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c densities.cpp -o densities.o
densities.cpp: In constructor ‘Poisson::Poisson(int*, int, double)’:
densities.cpp:122:66: error: expected primary-expression before ‘double’
  122 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                                  ^~~~~~
densities.cpp:122:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
  122 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                ^~~~~~
      |                                                calloc
densities.cpp: In destructor ‘virtual Poisson::~Poisson()’:
densities.cpp:137:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
  137 |                 Free(this->lxfactorials);
      |                 ^~~~
      |                 free
densities.cpp: In constructor ‘NegativeBinomial::NegativeBinomial(int*, int, double, double)’:
densities.cpp:344:66: error: expected primary-expression before ‘double’
  344 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                                  ^~~~~~
densities.cpp:344:48: error: ‘Calloc’ was not declared in this scope; did you mean ‘calloc’?
  344 |                 this->lxfactorials = (double*) Calloc(max_obs+1, double);
      |                                                ^~~~~~
      |                                                calloc
densities.cpp: In destructor ‘virtual NegativeBinomial::~NegativeBinomial()’:
densities.cpp:359:17: error: ‘Free’ was not declared in this scope; did you mean ‘free’?
  359 |                 Free(this->lxfactorials);
      |                 ^~~~
      |                 free
make: *** [/home/biocbuild/bbs-3.22-bioc/R/etc/Makeconf:209: densities.o] Error 1
ERROR: compilation failed for package ‘AneuFinder’
* removing ‘/tmp/Rtmpt1N2ik/Rinst104ebd27d1e521/AneuFinder’
      -----------------------------------
ERROR: package installation failed