Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-08-09 12:06 -0400 (Sat, 09 Aug 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4818 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4553 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4595 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4537 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 13/2317 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ACME 2.65.0 (landing page) Sean Davis
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the ACME package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ACME |
Version: 2.65.0 |
Command: chmod a+r ACME -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME |
StartedAt: 2025-08-08 17:16:07 -0400 (Fri, 08 Aug 2025) |
EndedAt: 2025-08-08 17:16:14 -0400 (Fri, 08 Aug 2025) |
EllapsedTime: 7.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ACME -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME ### ############################################################################## ############################################################################## * checking for file 'ACME/DESCRIPTION' ... OK * preparing 'ACME': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package 'ACME' ... ** this is package 'ACME' version '2.65.0' ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 14.2.0' gcc -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c windowChisq.c -o windowChisq.o windowChisq.c: In function 'windowChisq': windowChisq.c:58:21: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 58 | firstprobe>0) { | ~~~~~~~~~~^~ windowChisq.c:63:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 63 | lastprobe<(na-1)) { | ~~~~~~~~~^~~~~~~ windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable] 21 | double *xa,*xlocations,*xchivals; | ^~ windowChisq.c: At top level: windowChisq.c:86:20: error: initialization of 'void * (*)(void)' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types] 86 | {"windowChisq",&windowChisq,5}, | ^ windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun') make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:289: windowChisq.o] Error 1 ERROR: compilation failed for package 'ACME' * removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/RtmpmEWzWi/Rinstf14856995cf2/ACME' ----------------------------------- ERROR: package installation failed