Thomas N. Lawson
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/msPurity |
| Branch: RELEASE_3_9 |
| Last Commit: e5cd054 |
| Last Changed Date: 2019-05-02 11:54:02 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:35:56 -0400 (Wed, 16 Oct 2019).
| Package 1057/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| msPurity 1.10.0 Thomas N. Lawson
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: msPurity |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msPurity.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings msPurity_1.10.0.tar.gz |
| StartedAt: 2019-10-16 05:26:33 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 05:47:44 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 1270.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: msPurity.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msPurity.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings msPurity_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/msPurity.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msPurity/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'msPurity' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'msPurity' can be installed ... OK
* checking installed package size ... NOTE
installed size is 12.0Mb
sub-directories of 1Mb or more:
extdata 11.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'dbplyr'
All declared Imports should be used.
Package in Depends field not imported from: 'Rcpp'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Missing or unexported object: 'stats::mean'
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CV: no visible global function definition for 'sd'
Getfiles: no visible global function definition for 'fix'
assessPuritySingle: no visible binding for global variable 'parallel'
averageCluster: no visible global function definition for 'sd'
averageCluster: no visible global function definition for 'median'
covar: no visible global function definition for 'sd'
custom_dbWriteTable: no visible global function definition for 'head'
dimsPredictPuritySingle: no visible global function definition for
'read.csv'
dimsPredictPuritySingleMz: no visible global function definition for
'png'
dimsPredictPuritySingleMz: no visible binding for global variable
'mtchi'
dimsPredictPuritySingleMz: no visible binding for global variable
'alli'
dimsPredictPuritySingleMz: no visible global function definition for
'points'
dimsPredictPuritySingleMz: no visible binding for global variable
'mtch'
dimsPredictPuritySingleMz: no visible global function definition for
'text'
dimsPredictPuritySingleMz: no visible global function definition for
'dev.off'
dimsPredictPuritySingleMz: no visible global function definition for
'median'
dimsPredictPuritySingleMz: no visible global function definition for
'sd'
export2sqlite: no visible global function definition for
'packageVersion'
filterPrecursors: no visible binding for global variable
'l_speakmetaFiltered'
filterSMeta: no visible binding for global variable 'accession'
filterSMeta: no visible binding for global variable 'inPurity'
filterSMeta: no visible global function definition for 'lower'
filterSMeta: no visible binding for global variable 'polarity'
filterSMeta: no visible binding for global variable 'instrument_type'
filterSMeta: no visible binding for global variable 'instrument'
filterSMeta: no visible binding for global variable 'name.y'
filterSMeta: no visible binding for global variable 'retention_time'
filterSMeta: no visible binding for global variable 'grpid'
filterSMeta: no visible binding for global variable 'pid'
filterSMeta: no visible binding for global variable 'spectrum_type'
flag_remove: no visible global function definition for 'write.csv'
getScanPeaksSqlite: no visible binding for global variable 'pid'
getScanPeaksSqlite: no visible binding for global variable
'library_spectra_meta_id'
getScanPeaksSqlite: no visible binding for global variable 'pass_flag'
getScanPeaksSqlite: no visible binding for global variable 'type'
getScanPeaksSqlite: no visible binding for global variable
'spectraType'
getScanPeaksSqlite: no visible binding for global variable 'ra'
getSmeta: no visible binding for global variable 'pid'
getXcmsSmSummary: no visible binding for global variable 'q_con'
get_topn: no visible binding for global variable 'topn'
getxcmsSetObject: no visible global function definition for
'sampclass<-'
groupPeaksEx: no visible binding for global variable 'median'
iwNormGauss: no visible global function definition for 'dnorm'
iwNormGauss: no visible global function definition for 'approxfun'
iwNormQE.5: no visible global function definition for 'approxfun'
iwNormRcosine: no visible global function definition for 'approxfun'
linearPurity: no visible global function definition for 'approxfun'
matchi: no visible global function definition for 'match_factor'
medGroup: no visible binding for global variable 'median'
median_match_results: no visible global function definition for
'median'
msfrProcess: no visible global function definition for 'read.csv'
plotPurity: no visible global function definition for 'png'
plotPurity: no visible binding for global variable 'idx'
plotPurity: no visible binding for global variable 'purity'
plotPurity: no visible binding for global variable 'variable'
plotPurity: no visible global function definition for 'dev.off'
plotPurity: no visible global function definition for 'write.csv'
pp4file: no visible global function definition for 'png'
pp4file: no visible global function definition for 'plot'
pp4file: no visible global function definition for 'lines'
pp4file: no visible global function definition for 'legend'
pp4file: no visible global function definition for 'abline'
pp4file: no visible global function definition for 'dev.off'
pp4file: no visible global function definition for 'median'
predictPurityLCMSloop: no visible global function definition for
'median'
predictPurityLCMSloop : : no visible global function
definition for 'na.omit'
predictPurityLCMSloop : : no visible global function
definition for 'median'
predictPurityLCMSloop : : no visible global function
definition for 'sd'
purityA: no visible binding for global variable 'i'
queryVlibrary: no visible binding for global variable 'precursor_mz'
queryVlibrary: no visible binding for global variable 'retention_time'
queryVlibrarySingle: no visible binding for global variable 'pid'
queryVlibrarySingle: no visible binding for global variable
'library_spectra_meta_id'
removeIsotopes: no visible global function definition for 'write.csv'
rsd: no visible global function definition for 'sd'
rsde: no visible global function definition for 'sd'
setFlagMatrix: no visible global function definition for 'median'
set_snr_ra: no visible global function definition for 'median'
snrFilter: no visible global function definition for 'median'
stde: no visible global function definition for 'sd'
stderror: no visible global function definition for 'sd'
sum_calc_peaklist: no visible binding for global variable 'median'
write_msp_single: no visible global function definition for
'packageVersion'
xcmsGroupPurity: no visible binding for global variable 'median'
xcmsGroupPurity: no visible global function definition for 'median'
averageSpectra,purityD: no visible binding for global variable 'i'
subtract,purityD: no visible binding for global variable 'i'
validate,purityA: no visible global function definition for 'head'
writeOut,purityD: no visible global function definition for 'write.csv'
Undefined global functions or variables:
abline accession alli approxfun dev.off dnorm fix grpid head i idx
inPurity instrument instrument_type l_speakmetaFiltered legend
library_spectra_meta_id lines lower match_factor median mtch mtchi
na.omit name.y packageVersion parallel pass_flag pid plot png points
polarity precursor_mz purity q_con ra read.csv retention_time
sampclass<- sd spectraType spectrum_type text topn type variable
write.csv
Consider adding
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "abline", "legend", "lines", "plot", "points",
"text")
importFrom("stats", "approxfun", "dnorm", "median", "na.omit", "sd")
importFrom("utils", "fix", "head", "packageVersion", "read.csv",
"write.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
dimsPredictPurity-purityD-method 38.58 1.31 39.93
frag4feature-purityA-method 31.08 0.15 45.50
assessPuritySingle 10.08 0.10 10.85
createDatabase 8.43 0.73 11.40
combineAnnotations 8.00 0.31 10.99
purityA 7.31 0.11 7.37
subtract-purityD-method 5.89 1.24 7.12
flag_remove 6.66 0.22 39.80
purityX 6.12 0.48 20.42
groupPeaks-purityD-method 5.34 0.89 6.25
groupPeaksEx 4.80 1.19 6.01
spectralMatching 4.96 0.86 212.15
filterp-purityD-method 4.42 1.07 5.49
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
frag4feature-purityA-method 37.02 0.13 51.31
dimsPredictPurity-purityD-method 33.77 1.11 34.88
assessPuritySingle 11.24 0.05 11.25
createDatabase 9.22 0.41 9.91
purityA 9.05 0.14 9.19
subtract-purityD-method 7.31 1.16 8.47
flag_remove 7.87 0.17 27.02
combineAnnotations 7.37 0.17 10.12
groupPeaks-purityD-method 5.58 1.00 6.58
filterp-purityD-method 5.20 1.09 6.29
purityX 6.01 0.28 22.86
groupPeaksEx 4.72 1.17 5.91
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/msPurity.Rcheck/00check.log'
for details.
msPurity.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/msPurity_1.10.0.tar.gz && rm -rf msPurity.buildbin-libdir && mkdir msPurity.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msPurity.buildbin-libdir msPurity_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL msPurity_1.10.0.zip && rm msPurity_1.10.0.tar.gz msPurity_1.10.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 7901k 100 7901k 0 0 51.8M 0 --:--:-- --:--:-- --:--:-- 54.3M
install for i386
* installing *source* package 'msPurity' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'msPurity'
finding HTML links ... done
Getfiles html
assessPuritySingle html
averageAllFragSpectra-purityA-method html
averageInterFragSpectra-purityA-method
html
averageIntraFragSpectra-purityA-method
html
averageSpectra-purityD-method html
averageSpectraSingle html
combineAnnotations html
createDatabase html
createMSP-purityA-method html
create_database html
dimsPredictPurity-purityD-method html
dimsPredictPuritySingle html
filterFragSpectra-purityA-method html
filterp-purityD-method html
flag_remove html
frag4feature-purityA-method html
getP-purityD-method html
get_additional_mzml_meta html
groupPeaks-purityD-method html
groupPeaksEx html
initialize-purityD-method html
iwNormGauss html
iwNormQE.5 html
iwNormRcosine html
pcalc html
purityA html
purityD-class html
purityX html
show-purityA-method html
show-purityD-method html
show-purityX-method html
spectralMatching html
spectral_matching html
subtract-purityD-method html
subtractMZ html
validate-purityA-method html
writeOut-purityD-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'msPurity' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'msPurity' as msPurity_1.10.0.zip
* DONE (msPurity)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'msPurity' successfully unpacked and MD5 sums checked
|
msPurity.Rcheck/tests_i386/testthat.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(msPurity)
Loading required package: Rcpp
> Sys.setenv("R_TESTS" = "")
> test_check("msPurity")
[1] "\n"
[1] "########################################################"
[1] "## Checking pcalc functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityA ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking frag4feature ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking filterFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageIntraFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageInterFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageAllFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageIntraFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageInterFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageAllFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking createMSP functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## checking flag and remove (lc-ms) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking database (old schema) ##"
[1] "########################################################"
[1] "\n"
[1] "#######################################################"
[1] "## Checking database (new schema) ##"
[1] "#######################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) qvl ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) lvl ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) qvq ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking combine annotations based functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityX (grouped) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityX (single file) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking file list function ##"
[1] "########################################################"
[1] "=== check for using csv ==="
[1] "=== check for using mzML ==="
[1] "########################################################"
[1] "## Check average spectra (function only) ##"
[1] "########################################################"
[1] "=== check single core ==="
[1] "=== check simple clustering ==="
[1] "=== check using MsFileReader output (median SNR thres) ==="
snmeth: median[1] "=== check using MsFileReader output (precalc SNR thres) ==="
snmeth: precalc[1] "########################################################"
[1] "## Check mz subtraction (function only) ##"
[1] "########################################################"
[1] "########################################################"
[1] "## Check predict purity (function only) ##"
[1] "########################################################"
[1] "=== Check predicted purity for mzML files ==="
[1] "########################################################"
[1] "## Check groupPeaks (function only) ##"
[1] "########################################################"
[1] "=== check single core ==="
[1] "########################################################"
[1] "## Check mzML Workflow ##"
[1] "########################################################"
[1] "averaging spectra"
[1] "filtering spectra"
[1] "subtracting"
[1] "purity prediction"
== testthat results ===========================================================
[ OK: 175 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 0 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
135.89 7.75 245.42
|
msPurity.Rcheck/tests_x64/testthat.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(msPurity)
Loading required package: Rcpp
> Sys.setenv("R_TESTS" = "")
> test_check("msPurity")
[1] "\n"
[1] "########################################################"
[1] "## Checking pcalc functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityA ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking frag4feature ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking filterFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageIntraFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageInterFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageAllFragSpectra ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageIntraFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageInterFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking averageAllFragSpectra (with filter) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking createMSP functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## checking flag and remove (lc-ms) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking database (old schema) ##"
[1] "########################################################"
[1] "\n"
[1] "#######################################################"
[1] "## Checking database (new schema) ##"
[1] "#######################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) qvl ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) lvl ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Testing spectral matching (spectralMatching) qvq ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking combine annotations based functions ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityX (grouped) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking purityX (single file) ##"
[1] "########################################################"
[1] "\n"
[1] "########################################################"
[1] "## Checking file list function ##"
[1] "########################################################"
[1] "=== check for using csv ==="
[1] "=== check for using mzML ==="
[1] "########################################################"
[1] "## Check average spectra (function only) ##"
[1] "########################################################"
[1] "=== check single core ==="
[1] "=== check simple clustering ==="
[1] "=== check using MsFileReader output (median SNR thres) ==="
snmeth: median[1] "=== check using MsFileReader output (precalc SNR thres) ==="
snmeth: precalc[1] "########################################################"
[1] "## Check mz subtraction (function only) ##"
[1] "########################################################"
[1] "########################################################"
[1] "## Check predict purity (function only) ##"
[1] "########################################################"
[1] "=== Check predicted purity for mzML files ==="
[1] "########################################################"
[1] "## Check groupPeaks (function only) ##"
[1] "########################################################"
[1] "=== check single core ==="
[1] "########################################################"
[1] "## Check mzML Workflow ##"
[1] "########################################################"
[1] "averaging spectra"
[1] "filtering spectra"
[1] "subtracting"
[1] "purity prediction"
== testthat results ===========================================================
[ OK: 175 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 0 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
166.12 7.32 276.67
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msPurity.Rcheck/examples_i386/msPurity-Ex.timings
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msPurity.Rcheck/examples_x64/msPurity-Ex.timings
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