Leo Lahti
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/microbiome |
| Branch: RELEASE_3_9 |
| Last Commit: 4a7a3ac |
| Last Changed Date: 2019-05-02 11:54:08 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:39:10 -0400 (Wed, 16 Oct 2019).
| Package 996/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| microbiome 1.6.0 Leo Lahti
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: microbiome |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/microbiome_1.6.0.tar.gz && rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL microbiome_1.6.0.zip && rm microbiome_1.6.0.tar.gz microbiome_1.6.0.zip |
| StartedAt: 2019-10-15 19:38:29 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:40:45 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 136.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/microbiome_1.6.0.tar.gz && rm -rf microbiome.buildbin-libdir && mkdir microbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiome.buildbin-libdir microbiome_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL microbiome_1.6.0.zip && rm microbiome_1.6.0.tar.gz microbiome_1.6.0.zip
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install for i386
* installing *source* package 'microbiome' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'microbiome'
finding HTML links ... done
abundances html
finding level-2 HTML links ... done
aggregate_taxa html
aggregate_top_taxa html
alpha html
associate html
atlas1006 html
baseline html
bfratio html
bimodality html
bimodality_sarle html
boxplot_abundance html
chunk_reorder html
cmat2table html
collapse_replicates html
core html
core_abundance html
core_heatmap html
core_matrix html
core_members html
coverage html
default_colors html
densityplot html
dietswap html
divergence html
diversities html
diversity html
dominance html
dominant html
estimate_stability html
evenness html
find_optima html
gktau html
global html
group_age html
group_bmi html
heat html
hitchip.taxonomy html
hotplot html
inequality html
intermediate_stability html
log_modulo_skewness html
low_abundance html
map_levels html
merge_taxa2 html
meta html
microbiome-package html
multimodality html
neat html
neatsort html
noncore_abundance html
noncore_members html
peerj32 html
plot_atlas html
plot_composition html
plot_core html
plot_density html
plot_frequencies html
plot_landscape html
plot_regression html
plot_taxa_prevalence html
plot_tipping html
potential_analysis html
potential_univariate html
prevalence html
quiet html
radial_theta html
rare_members html
rarity html
read_biom2phyloseq html
read_csv2phyloseq html
read_mothur2phyloseq html
read_phyloseq html
readcount html
remove_samples html
remove_taxa html
richness html
summarize_phyloseq html
taxa html
time_normalize html
time_sort html
timesplit html
top_taxa html
transform html
variable_members html
write_phyloseq html
ztransform html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'microbiome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microbiome' as microbiome_1.6.0.zip
* DONE (microbiome)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'microbiome' successfully unpacked and MD5 sums checked