Multiple platform build/check report for BioC 3.9 - CHECK report for graper on celaya2

Package: graper

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings graper_1.0.0.tar.gz

StartedAt: 2019-10-16 03:25:45 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 03:27:18 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 92.7 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings graper_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/graper.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/graper.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL graper
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c fit_graper.cpp -o fit_graper.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-845.58
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-591.627
ELB improved by 253.952

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-530.186
ELB improved by 61.4415

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.338
ELB improved by 45.8479

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.491
ELB improved by 22.8471

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.128
ELB improved by 10.3631

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.882
ELB improved by 6.24528

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.676
ELB improved by 5.2063

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.697
ELB improved by 4.97896

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.839
ELB improved by 4.85834

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.335
ELB improved by 4.50349

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.548
ELB improved by 3.78701

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.681
ELB improved by 2.86743

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.649
ELB improved by 2.03179

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.208
ELB improved by 1.44076

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.119
ELB improved by 1.08954

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.208
ELB improved by 0.910572

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.368
ELB improved by 0.840625

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.532
ELB improved by 0.835492

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.664
ELB improved by 0.868212

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.736
ELB improved by 0.927659

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.724
ELB improved by 1.01217

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.611
ELB improved by 1.11268

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.406
ELB improved by 1.20585

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.131
ELB improved by 1.27431

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.813
ELB improved by 1.31863

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.469
ELB improved by 1.34336

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.122
ELB improved by 1.34686

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.801
ELB improved by 1.321

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.539
ELB improved by 1.26235

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.339
ELB improved by 1.2002

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.089
ELB improved by 1.24953

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.486
ELB improved by 1.60363

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.481
ELB improved by 2.00429

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.617
ELB improved by 1.86428

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.334
ELB improved by 1.28275

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.569
ELB improved by 0.765

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.106
ELB improved by 0.462883

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.792
ELB improved by 0.314836

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.547
ELB improved by 0.244643

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.337
ELB improved by 0.209776

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.147
ELB improved by 0.190342

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.971
ELB improved by 0.175958

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.811
ELB improved by 0.159495

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.674
ELB improved by 0.136958

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.565
ELB improved by 0.109707

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.482
ELB improved by 0.0827728

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.422
ELB improved by 0.0603098

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.378
ELB improved by 0.0436207

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.346
ELB improved by 0.0320379

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.322
ELB improved by 0.0242516

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.303
ELB improved by 0.0190434

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.287
ELB improved by 0.0155075

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.274
ELB improved by 0.0130377

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.263
ELB improved by 0.011249

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.253
ELB improved by 0.0099027

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.032
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-545.269
ELB improved by 307.764

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.958
ELB improved by 59.3107

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.199
ELB improved by 31.7589

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.159
ELB improved by 12.0407

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.142
ELB improved by 5.01614

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.171
ELB improved by 2.97164

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.027
ELB improved by 2.14419

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.235
ELB improved by 1.79154

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.603
ELB improved by 1.63184

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.054
ELB improved by 1.54922

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.555
ELB improved by 1.4994

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.092
ELB improved by 1.4626

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.664
ELB improved by 1.42771

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.278
ELB improved by 1.38643

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.947
ELB improved by 1.33098

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.693
ELB improved by 1.25387

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.543
ELB improved by 1.14959

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.525
ELB improved by 1.01817

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.657
ELB improved by 0.867978

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.943
ELB improved by 0.714075

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.371
ELB improved by 0.572144

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.919
ELB improved by 0.45243

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.561
ELB improved by 0.357865

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.275
ELB improved by 0.286093

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.042
ELB improved by 0.23255

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.85
ELB improved by 0.1926

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.687
ELB improved by 0.162434

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.548
ELB improved by 0.139223

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.427
ELB improved by 0.120971

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.321
ELB improved by 0.106295

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.226
ELB improved by 0.0942472

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.142
ELB improved by 0.0841731

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.067
ELB improved by 0.0756153

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.998
ELB improved by 0.0682504

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.936
ELB improved by 0.0618454

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.88
ELB improved by 0.056229

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.829
ELB improved by 0.051272

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.782
ELB improved by 0.0468744

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.739
ELB improved by 0.0429566

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.7
ELB improved by 0.039454

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.663
ELB improved by 0.0363126

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.63
ELB improved by 0.0334872

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.599
ELB improved by 0.0309392

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.57
ELB improved by 0.0286354

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.544
ELB improved by 0.0265473

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.519
ELB improved by 0.0246504

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.496
ELB improved by 0.0229233

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.475
ELB improved by 0.0213475

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.455
ELB improved by 0.0199069

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.436
ELB improved by 0.0185874

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.419
ELB improved by 0.0173768

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.403
ELB improved by 0.0162642

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.387
ELB improved by 0.0152401

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.373
ELB improved by 0.0142961

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.36
ELB improved by 0.0134248

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.347
ELB improved by 0.0126196

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.335
ELB improved by 0.0118744

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.324
ELB improved by 0.0111841

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.314
ELB improved by 0.010544

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.304
ELB improved by 0.00994967

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-901.265
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-557.102
ELB improved by 344.163

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-498.212
ELB improved by 58.89

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.228
ELB improved by 26.9839

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.699
ELB improved by 10.5293

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.979
ELB improved by 5.71934

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.532
ELB improved by 4.44773

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.472
ELB improved by 4.05936

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.494
ELB improved by 3.97822

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.534
ELB improved by 3.96027

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.704
ELB improved by 3.82966

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.272
ELB improved by 3.43246

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.51
ELB improved by 2.76166

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.5
ELB improved by 2.01016

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.11
ELB improved by 1.39014

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.139
ELB improved by 0.970412

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.434
ELB improved by 0.705108

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.902
ELB improved by 0.531887

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.486
ELB improved by 0.416108

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.145
ELB improved by 0.341617

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.847
ELB improved by 0.297202

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.572
ELB improved by 0.275161

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.301
ELB improved by 0.271423

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.019
ELB improved by 0.281283

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.728
ELB improved by 0.291367

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.447
ELB improved by 0.280805

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.203
ELB improved by 0.244305

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.002
ELB improved by 0.200988

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.834
ELB improved by 0.168074

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.686
ELB improved by 0.147706

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.551
ELB improved by 0.135489

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.423
ELB improved by 0.12748

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.302
ELB improved by 0.121457

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.185
ELB improved by 0.116354

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.074
ELB improved by 0.111691

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.966
ELB improved by 0.107267

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.863
ELB improved by 0.103007

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.765
ELB improved by 0.0988961

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.67
ELB improved by 0.0949497

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.578
ELB improved by 0.0911976

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.491
ELB improved by 0.087674

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.406
ELB improved by 0.084412

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.325
ELB improved by 0.0814408

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.246
ELB improved by 0.0787836

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.17
ELB improved by 0.0764574

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.095
ELB improved by 0.074474

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.022
ELB improved by 0.0728405

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.951
ELB improved by 0.0715615

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.88
ELB improved by 0.0706406

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.81
ELB improved by 0.070082

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.74
ELB improved by 0.0698924

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.67
ELB improved by 0.0700832

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.599
ELB improved by 0.0706725

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.528
ELB improved by 0.0716881

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.455
ELB improved by 0.0731716

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.379
ELB improved by 0.0751844

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.302
ELB improved by 0.0778167

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.22
ELB improved by 0.0812025

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.135
ELB improved by 0.0855446

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.044
ELB improved by 0.0911563

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.945
ELB improved by 0.098534

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.837
ELB improved by 0.108484

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.714
ELB improved by 0.12233

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.572
ELB improved by 0.142217

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.401
ELB improved by 0.171371

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.187
ELB improved by 0.213734

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.915
ELB improved by 0.272168

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.567
ELB improved by 0.347336

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.126
ELB improved by 0.441834

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.576
ELB improved by 0.54925

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.958
ELB improved by 0.618745

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.349
ELB improved by 0.609116

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 0.541217

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.365
ELB improved by 0.442637

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.024
ELB improved by 0.340832

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.769
ELB improved by 0.25504

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.579
ELB improved by 0.189338

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.439
ELB improved by 0.140753

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.333
ELB improved by 0.105253

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.254
ELB improved by 0.079395

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.194
ELB improved by 0.0605213

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.147
ELB improved by 0.0466687

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.11
ELB improved by 0.0364244

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.082
ELB improved by 0.0287854

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.059
ELB improved by 0.0230406

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.04
ELB improved by 0.0186843

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.025
ELB improved by 0.0153539

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.012
ELB improved by 0.0127873

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.001
ELB improved by 0.0107934

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.992
ELB improved by 0.00923209

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.209
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.682
ELB improved by 292.527

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.055
ELB improved by 62.627

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.61
ELB improved by 41.4442

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.298
ELB improved by 18.312

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.44
ELB improved by 7.85834

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.138
ELB improved by 5.30179

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.041
ELB improved by 5.09693

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.382
ELB improved by 5.65876

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.959
ELB improved by 6.42302

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.255
ELB improved by 6.70396

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.349
ELB improved by 5.90634

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.073
ELB improved by 4.27645

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.307
ELB improved by 2.76576

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.437
ELB improved by 1.87043

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.989
ELB improved by 1.44757

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.755
ELB improved by 1.23442

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.651
ELB improved by 1.10356

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.625
ELB improved by 1.02597

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.644
ELB improved by 0.980959

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.69
ELB improved by 0.95423

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.742
ELB improved by 0.94736

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.762
ELB improved by 0.980894

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.664
ELB improved by 1.09746

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.364
ELB improved by 1.30027

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.938
ELB improved by 1.42569

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.476
ELB improved by 1.46236

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.921
ELB improved by 1.55492

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.309
ELB improved by 1.61204

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.831
ELB improved by 1.47816

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.586
ELB improved by 1.24461

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.575
ELB improved by 1.01064

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.778
ELB improved by 0.797581

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.163
ELB improved by 0.614574

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.696
ELB improved by 0.46711

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.341
ELB improved by 0.355317

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.065
ELB improved by 0.27591

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.84
ELB improved by 0.22468

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.643
ELB improved by 0.197452

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.455
ELB improved by 0.188117

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.271
ELB improved by 0.1835

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.106
ELB improved by 0.165394

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.976
ELB improved by 0.130074

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.883
ELB improved by 0.092725

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.818
ELB improved by 0.0649988

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.77
ELB improved by 0.0475338

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.733
ELB improved by 0.0369686

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.703
ELB improved by 0.0303464

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.677
ELB improved by 0.0258828

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.655
ELB improved by 0.0226374

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.634
ELB improved by 0.0201339

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.616
ELB improved by 0.0181273

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.6
ELB improved by 0.0164844

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.585
ELB improved by 0.0151289

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.571
ELB improved by 0.0140149

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.558
ELB improved by 0.013117

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.545
ELB improved by 0.012426

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.533
ELB improved by 0.0119504

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.521
ELB improved by 0.0117233

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.51
ELB improved by 0.0118182

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.497
ELB improved by 0.0123835

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.484
ELB improved by 0.0137202

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.467
ELB improved by 0.0164658

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.445
ELB improved by 0.0220594

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.411
ELB improved by 0.0339911

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.35
ELB improved by 0.0611505

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.225
ELB improved by 0.124838

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.971
ELB improved by 0.254404

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.574
ELB improved by 0.396453

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-374.193
ELB improved by 0.380828

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.945
ELB improved by 0.248001

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.806
ELB improved by 0.138965

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.731
ELB improved by 0.0753867

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.689
ELB improved by 0.0415335

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.665
ELB improved by 0.0242779

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.65
ELB improved by 0.0155273

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.639
ELB improved by 0.0109601

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-373.63
ELB improved by 0.00845785

ELB converged
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 24 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  3.603   0.557   4.113

name	user	system	elapsed
coef.graper	0.079	0.027	0.109
getPIPs	0.076	0.026	0.101
graper	0.131	0.040	0.171
makeExampleData	0.019	0.005	0.024
makeExampleDataWithUnequalGroups	0.025	0.008	0.033
plotELBO	0.286	0.036	0.322
plotGroupPenalties	1.190	0.082	1.272
plotPosterior	1.010	0.053	1.062
predict.graper	2.731	0.102	2.834
print.graper	0.059	0.016	0.076

CHECK report for graper on celaya2

Summary

Command output

Installation output

Tests output

Example timings