Alessandro Mammana
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/bamsignals |
| Branch: RELEASE_3_9 |
| Last Commit: dba9a4a |
| Last Changed Date: 2019-05-02 11:53:53 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:06:21 -0400 (Wed, 16 Oct 2019).
| Package 102/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| bamsignals 1.16.0 Alessandro Mammana
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: bamsignals |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL bamsignals |
| StartedAt: 2019-10-15 18:33:33 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 18:33:58 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 25.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL bamsignals
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘bamsignals’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I/usr/local/include -fpic -g -O2 -Wall -c CountSignals.cpp -o CountSignals.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I/usr/local/include -fpic -g -O2 -Wall -c bamsignals.cpp -o bamsignals.o
bamsignals.cpp: In function ‘bool writeSamAsBamAndIndex(const string&, const string&)’:
bamsignals.cpp:516:18: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const bam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result]
sam_hdr_write(out, header);
~~~~~~~~~~~~~^~~~~~~~~~~~~
bamsignals.cpp:521:19: warning: ignoring return value of ‘int bam_write1(BGZF*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
bam_write1(out->fp.bgzf, b); // write the alignment to `out'
~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from bamsignals.cpp:4:0:
/home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include/htslib/sam.h:320:56: warning: ignoring return value of ‘int sam_index_build(const char*, int)’, declared with attribute warn_unused_result [-Wunused-result]
#define bam_index_build(fn, min_shift) (sam_index_build((fn), (min_shift)))
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
bamsignals.cpp:530:5: note: in expansion of macro ‘bam_index_build’
bam_index_build(bampath.c_str(), 0);
^
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/zlibbioc/include" -I/usr/local/include -fpic -g -O2 -Wall -c bamsignals_init.c -o bamsignals_init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o bamsignals.so CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o /home/biocbuild/bbs-3.9-bioc/R/library/Rhtslib/usrlib/libhts.a -lz -lm -lbz2 -llzma -lpthread -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-bamsignals/00new/bamsignals/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bamsignals)