Charles E. Determan Jr.
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/OmicsMarkeR |
| Branch: RELEASE_3_9 |
| Last Commit: 8410584 |
| Last Changed Date: 2019-05-02 11:53:54 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:06:31 -0400 (Wed, 16 Oct 2019).
| Package 1133/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmicsMarkeR 1.16.0 Charles E. Determan Jr.
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OmicsMarkeR |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.16.0.tar.gz |
| StartedAt: 2019-10-16 03:39:03 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 03:42:45 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 221.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmicsMarkeR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/OmicsMarkeR.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmicsMarkeR/DESCRIPTION’ ... OK
* this is package ‘OmicsMarkeR’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmicsMarkeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
perm.class 12.568 0.008 12.577
perm.features 12.468 0.000 12.469
predictNewClasses 10.783 0.020 10.833
feature.table 9.617 0.048 9.676
performance.metrics 9.429 0.020 9.448
fs.stability 9.054 0.000 9.054
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
OmicsMarkeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL OmicsMarkeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘OmicsMarkeR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicsMarkeR)
OmicsMarkeR.Rcheck/tests/testthat.Rout
R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsMarkeR)
>
> test_check("OmicsMarkeR")
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 100 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
>
> proc.time()
user system elapsed
64.093 0.352 64.449
OmicsMarkeR.Rcheck/OmicsMarkeR-Ex.timings
| name | user | system | elapsed | |
| RPT | 0.005 | 0.000 | 0.018 | |
| aggregation | 0.007 | 0.000 | 0.007 | |
| canberra | 0.001 | 0.000 | 0.002 | |
| canberra_stability | 0.002 | 0.000 | 0.001 | |
| create.corr.matrix | 0.004 | 0.003 | 0.008 | |
| create.discr.matrix | 0.007 | 0.000 | 0.006 | |
| create.random.matrix | 0.007 | 0.000 | 0.007 | |
| denovo.grid | 0.008 | 0.007 | 0.016 | |
| feature.table | 9.617 | 0.048 | 9.676 | |
| fit.only.model | 2.917 | 0.004 | 2.922 | |
| fs.ensembl.stability | 0 | 0 | 0 | |
| fs.stability | 9.054 | 0.000 | 9.054 | |
| jaccard | 0.001 | 0.000 | 0.001 | |
| kuncheva | 0.001 | 0.000 | 0.001 | |
| modelList | 0.001 | 0.000 | 0.001 | |
| ochiai | 0.001 | 0.000 | 0.000 | |
| pairwise.model.stability | 0.014 | 0.000 | 0.014 | |
| pairwise.stability | 0.006 | 0.000 | 0.007 | |
| params | 0.003 | 0.000 | 0.003 | |
| performance.metrics | 9.429 | 0.020 | 9.448 | |
| perm.class | 12.568 | 0.008 | 12.577 | |
| perm.features | 12.468 | 0.000 | 12.469 | |
| pof | 0.001 | 0.000 | 0.001 | |
| predictNewClasses | 10.783 | 0.020 | 10.833 | |
| sorensen | 0.001 | 0.000 | 0.000 | |
| spearman | 0.001 | 0.000 | 0.001 | |
| svmrfeFeatureRanking | 0.064 | 0.000 | 0.064 | |
| svmrfeFeatureRankingForMulticlass | 0.111 | 0.000 | 0.111 | |