Vlad Petyuk
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/MSnID |
| Branch: RELEASE_3_9 |
| Last Commit: d328143 |
| Last Changed Date: 2019-07-03 03:08:09 -0400 (Wed, 03 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:31:09 -0400 (Wed, 16 Oct 2019).
| Package 1056/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MSnID 1.18.1 Vlad Petyuk
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: MSnID |
| Version: 1.18.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MSnID_1.18.1.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MSnID_1.18.1.zip && rm MSnID_1.18.1.tar.gz MSnID_1.18.1.zip |
| StartedAt: 2019-10-15 20:20:43 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:21:59 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 75.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MSnID_1.18.1.tar.gz && rm -rf MSnID.buildbin-libdir && mkdir MSnID.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSnID.buildbin-libdir MSnID_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MSnID_1.18.1.zip && rm MSnID_1.18.1.tar.gz MSnID_1.18.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2559k 100 2559k 0 0 28.1M 0 --:--:-- --:--:-- --:--:-- 30.8M
install for i386
* installing *source* package 'MSnID' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSnID'
finding HTML links ... done
MSnID-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/MSnID-class.Rd:65: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/MSnID-class.Rd:81: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/MSnID-class.Rd:102: file link 'proteins' in package 'MSnID' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/MSnID-class.Rd:188: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
MSnID-package html
MSnIDFilter-class html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/MSnIDFilter-class.Rd:86: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
accessions html
apply_filter html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/apply_filter.Rd:20: file link 'MSnIDFilter' in package 'MSnID' does not exist and so has been treated as a topic
assess_missed_cleavages html
assess_termini html
correct_peak_selection html
data html
evaluate_filter html
id_quality html
infer_parsimonious_accessions html
mass_measurement_error html
optimize_filter html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/optimize_filter.Rd:48: file link 'mclapply' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/optimize_filter.Rd:67: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
peptides html
psms html
read_mzIDs html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/read_mzIDs.Rd:11: file link 'R.cache' in package 'R.cache' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpw1V6de/R.INSTALL1ac876b47a23/MSnID/man/read_mzIDs.Rd:27: missing file link 'mzR-package'
recalibrate html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MSnID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSnID' as MSnID_1.18.1.zip
* DONE (MSnID)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MSnID' successfully unpacked and MD5 sums checked