Package: CAMERA

Version: 1.40.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CAMERA_1.40.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.40.0.zip && rm CAMERA_1.40.0.tar.gz CAMERA_1.40.0.zip

StartedAt: 2019-10-15 20:27:26 -0400 (Tue, 15 Oct 2019)

EndedAt: 2019-10-15 20:32:36 -0400 (Tue, 15 Oct 2019)

EllapsedTime: 310.1 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CAMERA_1.40.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.40.0.zip && rm CAMERA_1.40.0.tar.gz CAMERA_1.40.0.zip
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install for i386

* installing *source* package 'CAMERA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CAMERA.buildbin-libdir/00LOCK-CAMERA/00new/CAMERA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CAMERA'
    finding HTML links ... done
    annotate-methods                        html  
    annotateDiffreport                      html  
    finding level-2 HTML links ... done

    calcCaS-methods                         html  
    calcCiS-methods                         html  
    calcIsotopes-methods                    html  
    calcPC-methods                          html  
    calcPC.hcs-methods                      html  
    calcPC.lpc-methods                      html  
    cleanParallel                           html  
    combinexsAnnos                          html  
    compoundLibraries                       html  
    compoundQuantiles-class                 html  
    compoundQuantiles                       html  
    findAdducts-methods                     html  
    findIsotopes-methods                    html  
    findIsotopesWithValidation-methods      html  
    findKendrickMasses                      html  
    findNeutralLoss                         html  
    findNeutralLossSpecs                    html  
    getAllPeakEICs-methods                  html  
    getAtomCount-compoundQuantiles-method   html  
    getIsotopeCluster                       html  
    getIsotopeProportion-compoundQuantiles-method
                                            html  
    getPeaklist-methods                     html  
    getReducedPeaklist-methods              html  
    getpspectra                             html  
    groupCorr-methods                       html  
    groupDen-methods                        html  
    groupFWHM-methods                       html  
    massWindowSizes                         html  
    mm14                                    html  
    plotEIC.xsAnnotate                      html  
    plotPsSpectrum.xsAnnotate               html  
    psDist-methods                          html  
    pspec2metfrag                           html  
    ruleSet-class                           html  
    xsAnnotate-class                        html  
    xsAnnotate                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CAMERA' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAMERA' as CAMERA_1.40.0.zip
* DONE (CAMERA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CAMERA' successfully unpacked and MD5 sums checked