Package: biomformat

Version: 1.11.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biomformat_1.11.1.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biomformat_1.11.1.zip && rm biomformat_1.11.1.tar.gz biomformat_1.11.1.zip

StartedAt: 2019-04-08 18:45:29 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:46:04 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 34.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biomformat_1.11.1.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biomformat_1.11.1.zip && rm biomformat_1.11.1.tar.gz biomformat_1.11.1.zip
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install for i386

* installing *source* package 'biomformat' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
  converting help for package 'biomformat'
    finding HTML links ... done
    biom-class                              html  
    biom-methods                            html  
    finding level-2 HTML links ... done

    biom-package                            html  
    biom_data-methods                       html  
    biom_shape-methods                      html  
    colnames-methods                        html  
    header-methods                          html  
    make_biom                               html  
    matrix_element_type-methods             html  
    ncol-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
    nrow-methods                            html  
    observation_metadata-methods            html  
    read_biom                               html  
    read_hdf5_biom                          html  
    rownames-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEnOt5y/R.INSTALL141c41df1f76/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
    sample_metadata-methods                 html  
    show-methods                            html  
    write_biom                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.11.1.zip
* DONE (biomformat)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'biomformat' successfully unpacked and MD5 sums checked