Clarice Groeneveld
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RTNsurvival |
| Branch: master |
| Last Commit: 47aa372 |
| Last Changed Date: 2019-04-04 13:19:22 -0400 (Thu, 04 Apr 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:18:29 -0400 (Tue, 09 Apr 2019).
| Package 1406/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RTNsurvival 1.7.4 Clarice Groeneveld
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: RTNsurvival |
| Version: 1.7.4 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.7.4.tar.gz |
| StartedAt: 2019-04-09 05:11:19 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:16:10 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 290.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RTNsurvival.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNsurvival_1.7.4.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RTNsurvival.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNsurvival/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNsurvival’ version ‘1.7.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNsurvival’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
tnsPlotGSEA2-methods 6.702 0.846 7.551
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
RTNsurvival.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RTNsurvival ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘RTNsurvival’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNsurvival)
RTNsurvival.Rcheck/tests/runTests.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("RTNsurvival")
RUNIT TEST PROTOCOL -- Tue Apr 9 05:15:56 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
RTNsurvival RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
12.883 1.308 14.497
RTNsurvival.Rcheck/RTNsurvival-Ex.timings
| name | user | system | elapsed | |
| TNS.data | 0.005 | 0.003 | 0.006 | |
| tni2tnsPreprocess-methods | 0.374 | 0.029 | 0.402 | |
| tnsAREA3-methods | 1.784 | 0.124 | 1.909 | |
| tnsCox-methods | 1.558 | 0.325 | 1.882 | |
| tnsCoxInteraction-methods | 1.283 | 0.253 | 1.536 | |
| tnsGSEA2-methods | 1.640 | 0.295 | 1.935 | |
| tnsGet-methods | 1.726 | 0.257 | 1.983 | |
| tnsInteraction-methods | 1.199 | 0.228 | 1.427 | |
| tnsKM-methods | 1.222 | 0.189 | 1.410 | |
| tnsKmInteraction-methods | 1.557 | 0.249 | 1.807 | |
| tnsPlotCovariates-methods | 3.926 | 0.295 | 4.222 | |
| tnsPlotCox-methods | 1.198 | 0.213 | 1.413 | |
| tnsPlotCoxInteraction-methods | 1.192 | 0.221 | 1.414 | |
| tnsPlotGSEA2-methods | 6.702 | 0.846 | 7.551 | |
| tnsPlotKM-methods | 1.968 | 0.417 | 2.387 | |
| tnsPlotKmInteraction-methods | 1.301 | 0.298 | 1.600 | |
| tnsPlotSRE-methods | 1.517 | 0.548 | 1.542 | |
| tnsSRD-methods | 1.736 | 0.669 | 1.761 | |
| tnsSRE-methods | 1.931 | 0.777 | 1.719 | |
| tnsStratification | 0.001 | 0.001 | 0.001 | |