Marcin Kosinski
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RTCGA |
| Branch: master |
| Last Commit: a53aded |
| Last Changed Date: 2019-01-04 13:12:15 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:24:55 -0400 (Tue, 09 Apr 2019).
| Package 1402/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RTCGA 1.13.1 Marcin Kosinski
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: RTCGA |
| Version: 1.13.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RTCGA_1.13.1.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.13.1.zip && rm RTCGA_1.13.1.tar.gz RTCGA_1.13.1.zip |
| StartedAt: 2019-04-08 19:36:25 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 19:37:14 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 49.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RTCGA_1.13.1.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.13.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.13.1.zip && rm RTCGA_1.13.1.tar.gz RTCGA_1.13.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2434k 100 2434k 0 0 29.7M 0 --:--:-- --:--:-- --:--:-- 32.5M
install for i386
* installing *source* package 'RTCGA' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGA'
finding HTML links ... done
RTCGA-package html
boxplotTCGA html
finding level-2 HTML links ... done
checkTCGA html
convertTCGA html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/convertTCGA.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
datasetsTCGA html
downloadTCGA html
expressionsTCGA html
heatmapTCGA html
infoTCGA html
installTCGA html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpOYj4d9/R.INSTALL1a3877b07dac/RTCGA/man/installTCGA.Rd:16: file link 'install_github' in package 'devtools' does not exist and so has been treated as a topic
kmTCGA html
mutationsTCGA html
pcaTCGA html
readTCGA html
survivalTCGA html
theme_RTCGA html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RTCGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA' as RTCGA_1.13.1.zip
* DONE (RTCGA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'RTCGA' successfully unpacked and MD5 sums checked