| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:27:49 -0400 (Tue, 09 Apr 2019).
| Package 1018/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MoonlightR 1.9.0 Antonio Colaprico
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: MoonlightR |
| Version: 1.9.0 |
| Command: chmod a+r MoonlightR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoonlightR |
| StartedAt: 2019-04-08 23:40:18 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 23:42:14 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 117.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r MoonlightR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MoonlightR
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* checking for file 'MoonlightR/DESCRIPTION' ... OK
* preparing 'MoonlightR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Moonlight.Rmd' using rmarkdown
Loading MoonlightR
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Registered S3 methods overwritten by 'ggplot2':
method from
[.quosures rlang
c.quosures rlang
print.quosures rlang
Registered S3 method overwritten by 'enrichplot':
method from
fortify.enrichResult DOSE
Registered S3 method overwritten by 'R.oo':
method from
throw.default R.methodsS3
Registered S3 method overwritten by 'rvest':
method from
read_xml.response xml2
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "Moonlight_files/figure-html/unnamed-chunk-2-1.png" -trim "Moonlight_files/figure-html/unnamed-chunk-2-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
'convert "Moonlight_files/figure-html/unnamed-chunk-12-1.png" -trim "Moonlight_files/figure-html/unnamed-chunk-12-1.png"' execution failed with error code 4
Quitting from lines 556-567 (Moonlight.Rmd)
Error: processing vignette 'Moonlight.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'Moonlight.Rmd'
SUMMARY: processing the following file failed:
'Moonlight.Rmd'
Error: Vignette re-building failed.
Execution halted