| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:41:11 -0400 (Tue, 09 Apr 2019).
| Package 209/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Cardinal 2.1.6 Kylie A. Bemis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: Cardinal |
| Version: 2.1.6 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Cardinal |
| StartedAt: 2019-04-08 18:10:43 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 18:11:44 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 61.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Cardinal
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘Cardinal’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c DIP.cpp -o DIP.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c dynAlign.cpp -o dynAlign.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c imzML.cpp -o imzML.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c localMaxima.cpp -o localMaxima.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c pugixml.cpp -o pugixml.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c spatial.cpp -o spatial.o
spatial.cpp: In function ‘SEXPREC* get_spatial_weights(SEXP, SEXP, double, bool) [with T1 = int; T2 = int]’:
spatial.cpp:214:6: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
int k; // center pixel
^
spatial.cpp: In function ‘SEXPREC* get_spatial_weights(SEXP, SEXP, double, bool) [with T1 = int; T2 = double]’:
spatial.cpp:214:6: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
spatial.cpp: In function ‘SEXPREC* get_spatial_weights(SEXP, SEXP, double, bool) [with T1 = double; T2 = int]’:
spatial.cpp:214:6: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
spatial.cpp: In function ‘SEXPREC* get_spatial_weights(SEXP, SEXP, double, bool) [with T1 = double; T2 = double]’:
spatial.cpp:214:6: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o Cardinal.so DIP.o dynAlign.o imzML.o localMaxima.o pugixml.o spatial.o utils.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-Cardinal/00new/Cardinal/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘filter’ in package ‘Cardinal’
Creating a new generic function for ‘group_by’ in package ‘Cardinal’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Cardinal)