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BUILD report for AnnotationHub on tokay2

This page was generated on 2019-04-09 12:02:40 -0400 (Tue, 09 Apr 2019).

Package 61/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationHub 2.15.12
Bioconductor Package Maintainer
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/AnnotationHub
Branch: master
Last Commit: 1e1d17b
Last Changed Date: 2019-03-29 14:21:32 -0400 (Fri, 29 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: AnnotationHub
Version: 2.15.12
Command: chmod a+r AnnotationHub -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationHub
StartedAt: 2019-04-08 21:57:31 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:00:51 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 199.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r AnnotationHub -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationHub
###
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* checking for file 'AnnotationHub/DESCRIPTION' ... OK
* preparing 'AnnotationHub':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'AnnotationHub-HOWTO.Rmd' using rmarkdown
downloading 0 resources
loading from cache 
    'AH57960 : 64702'
    'AH57960 : 64703'
Quitting from lines 320-322 (AnnotationHub-HOWTO.Rmd) 
Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics:
scanVcf: missing value where TRUE/FALSE needed
  path: C:\Users\biocbuild\AppData\Local\AnnotationHub\AnnotationHub\Cache/133041a15b0b_64702
--- failed re-building 'AnnotationHub-HOWTO.Rmd'

--- re-building 'AnnotationHub.Rmd' using rmarkdown
--- finished re-building 'AnnotationHub.Rmd'

--- re-building 'CreateAnAnnotationPackage.Rmd' using rmarkdown
--- finished re-building 'CreateAnAnnotationPackage.Rmd'

--- re-building 'TroubleshootingTheCache.Rmd' using rmarkdown
--- finished re-building 'TroubleshootingTheCache.Rmd'

SUMMARY: processing the following file failed:
  'AnnotationHub-HOWTO.Rmd'

Error: Vignette re-building failed.
Execution halted