Stefano de Pretis
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_8 |
| Last Commit: c58adb1 |
| Last Changed Date: 2019-03-08 13:26:16 -0400 (Fri, 08 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:51:11 -0400 (Tue, 16 Apr 2019).
| Package 848/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.1 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LowMACA |
| Version: 1.12.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings LowMACA_1.12.1.tar.gz |
| StartedAt: 2019-04-16 01:02:44 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:14:25 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 700.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings LowMACA_1.12.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/LowMACA.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.12.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 177.860 10.832 189.899
lfmSingleSequence 100.312 5.884 106.940
LowMACA-class 9.468 2.544 37.525
LowMACA-package 8.596 2.304 25.100
setup 8.384 1.108 66.295
lmPlotSingleSequence 5.968 2.532 8.923
alignSequences 4.912 0.652 17.833
getMutations 1.128 0.264 8.794
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.008 | 0.000 | 0.009 | |
| LowMACA-class | 9.468 | 2.544 | 37.525 | |
| LowMACA-package | 8.596 | 2.304 | 25.100 | |
| LowMACA_AML | 0.036 | 0.000 | 0.038 | |
| alignSequences | 4.912 | 0.652 | 17.833 | |
| allPfamAnalysis | 177.860 | 10.832 | 189.899 | |
| bpAll | 1.220 | 0.004 | 1.226 | |
| entropy | 1.272 | 0.000 | 1.277 | |
| getMutations | 1.128 | 0.264 | 8.794 | |
| lfm | 2.032 | 0.052 | 2.087 | |
| lfmSingleSequence | 100.312 | 5.884 | 106.940 | |
| lmAlignment | 0.068 | 0.004 | 0.072 | |
| lmEntropy | 1.232 | 0.004 | 1.235 | |
| lmMutations | 0.040 | 0.000 | 0.039 | |
| lmObj | 0.076 | 0.008 | 0.084 | |
| lmParams | 0.756 | 0.256 | 1.057 | |
| lmPlot | 2.092 | 0.104 | 2.197 | |
| lmPlotSingleSequence | 5.968 | 2.532 | 8.923 | |
| mapMutations | 0.576 | 0.012 | 0.587 | |
| newLowMACA | 3.120 | 0.044 | 3.183 | |
| nullProfile | 0.888 | 0.012 | 0.897 | |
| parallelize | 0.620 | 0.004 | 0.624 | |
| protter | 1.120 | 0.008 | 3.656 | |
| setup | 8.384 | 1.108 | 66.295 | |
| showTumorType | 0.060 | 0.112 | 0.368 | |