Anne Biton
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/MineICA |
| Branch: RELEASE_3_7 |
| Last Commit: b4a1fce |
| Last Changed Date: 2018-04-30 10:35:29 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:36:57 -0400 (Wed, 17 Oct 2018).
| Package 907/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MineICA 1.20.0 Anne Biton
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: MineICA |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MineICA_1.20.0.tar.gz && rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MineICA_1.20.0.zip && rm MineICA_1.20.0.tar.gz MineICA_1.20.0.zip |
| StartedAt: 2018-10-16 20:30:25 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:31:50 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 84.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/MineICA_1.20.0.tar.gz && rm -rf MineICA.buildbin-libdir && mkdir MineICA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MineICA.buildbin-libdir MineICA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL MineICA_1.20.0.zip && rm MineICA_1.20.0.tar.gz MineICA_1.20.0.zip
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install for i386
* installing *source* package 'MineICA' ...
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'sampleNames<-' in package 'MineICA'
** help
*** installing help indices
converting help for package 'MineICA'
finding HTML links ... done
A html
Alist html
Slist html
addGenesToGoReport html
annot2Color html
annotCarbayo html
annotFeatures html
annotFeaturesComp html
annotFeaturesWithBiomaRt html
annotInGene html
annotReciprocal html
buildIcaSet html
buildMineICAParams html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/buildMineICAParams.Rd:50: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/buildMineICAParams.Rd:54: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/buildMineICAParams.Rd:67: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
build_sortHeatmap html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/build_sortHeatmap.Rd:45: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
class-IcaSet html
finding level-2 HTML links ... done
class-MineICAParams html
clusVarAnalysis html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/clusVarAnalysis.Rd:16: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/clusVarAnalysis.Rd:19: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
clusterFastICARuns html
clusterSamplesByComp html
clusterSamplesByComp_multiple html
compareAn html
compareAn2graphfile html
compareGenes html
cor2An html
correl2Comp html
dat html
dataCarbayo html
doEnrichment html
getComp html
getProj html
getSdExpr html
hgOver html
hypergeoAn html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/hypergeoAn.Rd:53: file link 'GOstats' in package 'GOstats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/hypergeoAn.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
icaSetCarbayo html
icaSetKim html
icaSetRiester html
icaSetStransky html
indComp html
mergeGostatsResults html
nbOccByGeneInComp html
nbOccInComp html
nbOccInComp_simple html
nodeAttrs html
plotAllMix html
plotCorGraph html
plotDens2classInComp_plotOnly html
plotDensAllAnnotInAllComp html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotDensAllAnnotInAllComp.Rd:14: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotDensAllAnnotInAllComp.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
plotDensOneAnnotInAllComp html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotDensOneAnnotInAllComp.Rd:12: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
plotMclust html
plotMix html
plotPosAnnotInComp html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotPosAnnotInComp.Rd:80: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
plotPosOneAnnotInComp_ggplot html
plotPosOneAnnotLevInComp_ggplot html
plotPosSamplesInComp html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotPosSamplesInComp.Rd:60: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotPosSamplesInComp.Rd:22: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/plotPosSamplesInComp.Rd:101: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
plot_heatmapsOnSel html
qualVarAnalysis html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/qualVarAnalysis.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/qualVarAnalysis.Rd:21: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
quantVarAnalysis html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/quantVarAnalysis.Rd:17: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/quantVarAnalysis.Rd:21: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
readA html
readS html
relativePath html
runAn html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/runAn.Rd:22: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/runAn.Rd:26: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
runCompareIcaSets html
runEnrich html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/runEnrich.Rd:11: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/runEnrich.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
runICA html
selectContrib html
selectFeatures_IQR html
selectWitnessGenes html
wilcoxOrKruskalOnA html
writeGenes html
writeGostatsHtmltable html
writeHtmlResTestsByAnnot html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/writeHtmlResTestsByAnnot.Rd:14: file link 'MineICAParams-class' in package 'MineICA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4CF0XV/R.INSTALL24cc5cfa1ae3/MineICA/man/writeHtmlResTestsByAnnot.Rd:18: file link 'IcaSet-class' in package 'MineICA' does not exist and so has been treated as a topic
writeProjByComp html
writeRnkFiles html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'MineICA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MineICA' as MineICA_1.20.0.zip
* DONE (MineICA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'MineICA' successfully unpacked and MD5 sums checked
In R CMD INSTALL