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BUILD BIN report for GenoGAM on tokay2

This page was generated on 2018-10-17 08:42:02 -0400 (Wed, 17 Oct 2018).

Package 586/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenoGAM 1.8.0
Georg Stricker
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GenoGAM
Branch: RELEASE_3_7
Last Commit: 394e735
Last Changed Date: 2018-04-30 10:35:41 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenoGAM
Version: 1.8.0
Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_1.8.0.tar.gz
StartedAt: 2018-10-17 06:22:50 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:23:28 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 37.7 seconds
RetCode: 0
Status:  OK  
PackageFile: GenoGAM_1.8.0.zip
PackageFileSize: 3.704 MiB

Command output

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### Running command:
###
###   rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_1.8.0.tar.gz
###
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install for i386

* installing *source* package 'GenoGAM' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible 
Note: break used in wrong context: no loop is visible 
Note: break used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'GenoGAM'
    finding HTML links ... done
    GenoGAM-class                           html  
    GenoGAM-methods                         html  
    GenoGAM-view                            html  
    GenoGAM                                 html  
    GenoGAMDataSet-brackets                 html  
    GenoGAMDataSet-class                    html  
    GenoGAMDataSet                          html  
    GenoGAMDataSetToDataFrame               html  
    GenoGAMSettings-class                   html  
    GenoGAMSettings                         html  
    GenomicTiles-brackets                   html  
    GenomicTiles-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpyki9Et/R.INSTALL157c70e9e27/GenoGAM/man/GenomicTiles-class.Rd:21: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    GenomicTiles-metrics                    html  
    GenomicTiles-view                       html  
    GenomicTiles                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpyki9Et/R.INSTALL157c70e9e27/GenoGAM/man/GenomicTiles.Rd:25: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    asDataFrame                             html  
    callPeaks                               html  
    changeSettings                          html  
    checkSettings                           html  
    computeRegionSignificance               html  
    computeSignificance                     html  
    computeSizeFactors                      html  
    dataRange                               html  
    design                                  html  
    filterData                              html  
    fitGenoGAM                              html  
    getChunkIndex                           html  
    getCoordinates                          html  
    getIndex                                html  
    getIndexCoordinates                     html  
    getTile                                 html  
    makeTestGenoGAM                         html  
    makeTestGenoGAMDataSet                  html  
    makeTestGenomicTiles                    html  
    plot.GenoGAM                            html  
    qualityCheck                            html  
    sizeFactors                             html  
    subset-GenoGAM-method                   html  
    subset-GenoGAMDataSet-method            html  
    subset-GenomicTiles-method              html  
    subsetByOverlaps-GenoGAM-ANY-method     html  
    subsetByOverlaps-GenoGAMDataSet-GRanges-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpyki9Et/R.INSTALL157c70e9e27/GenoGAM/man/subsetByOverlaps-GenoGAMDataSet-GRanges-method.Rd:17: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    subsetByOverlaps-GenomicTiles-GRanges-method
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpyki9Et/R.INSTALL157c70e9e27/GenoGAM/man/subsetByOverlaps-GenomicTiles-GRanges-method.Rd:16: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    tileSettings-elements                   html  
    tileSettings                            html  
    untile                                  html  
    writeToBEDFile                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenoGAM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenoGAM' as GenoGAM_1.8.0.zip
* DONE (GenoGAM)
In R CMD INSTALL
In R CMD INSTALL