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This page was generated on 2018-10-17 08:41:06 -0400 (Wed, 17 Oct 2018).
| Package 446/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| EnrichedHeatmap 1.10.0 Zuguang Gu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: EnrichedHeatmap |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/EnrichedHeatmap_1.10.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.10.0.zip && rm EnrichedHeatmap_1.10.0.tar.gz EnrichedHeatmap_1.10.0.zip |
| StartedAt: 2018-10-16 20:17:15 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:18:36 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 81.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/EnrichedHeatmap_1.10.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.10.0.zip && rm EnrichedHeatmap_1.10.0.tar.gz EnrichedHeatmap_1.10.0.zip
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install for i386
* installing *source* package 'EnrichedHeatmap' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o
dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)':
dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) {
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'EnrichedHeatmap'
finding HTML links ... done
EnrichedHeatmap-class html
EnrichedHeatmap html
EnrichedHeatmapList-class html
EnrichedHeatmapList html
Extract.normalizedMatrix html
add.AdditiveUnit html
finding level-2 HTML links ... done
anno_enriched html
copyAttr html
default_smooth_fun html
discretize html
dist_by_closeness html
draw-EnrichedHeatmap-method html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqQKWHT/R.INSTALLdfc1f5619c1/EnrichedHeatmap/man/draw-EnrichedHeatmap-method.rd:16: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
draw-EnrichedHeatmapList-method html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqQKWHT/R.INSTALLdfc1f5619c1/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'make_layout' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqQKWHT/R.INSTALLdfc1f5619c1/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqQKWHT/R.INSTALLdfc1f5619c1/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:22: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic
draw-dispatch html
enriched_score html
extract_anno_enriched html
getSignalsFromList html
makeWindows html
normalizeToMatrix html
print.normalizedMatrix html
rbind.normalizedMatrix html
show-EnrichedHeatmap-method html
show-EnrichedHeatmapList-method html
show-dispatch html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'EnrichedHeatmap' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o
dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)':
dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) {
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichedHeatmap' as EnrichedHeatmap_1.10.0.zip
* DONE (EnrichedHeatmap)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'EnrichedHeatmap' successfully unpacked and MD5 sums checked
In R CMD INSTALL