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INSTALL report for DChIPRep on tokay2

This page was generated on 2018-10-17 08:41:15 -0400 (Wed, 17 Oct 2018).

Package 350/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DChIPRep 1.10.0
Bernd Klaus
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/DChIPRep
Branch: RELEASE_3_7
Last Commit: 4ae31d8
Last Changed Date: 2018-04-30 10:35:38 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DChIPRep
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DChIPRep_1.10.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.10.0.zip && rm DChIPRep_1.10.0.tar.gz DChIPRep_1.10.0.zip
StartedAt: 2018-10-16 20:32:15 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:33:41 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 86.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DChIPRep_1.10.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.10.0.zip && rm DChIPRep_1.10.0.tar.gz DChIPRep_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  690k  100  690k    0     0  10.2M      0 --:--:-- --:--:-- --:--:-- 11.4M

install for i386

* installing *source* package 'DChIPRep' ...
** R
** data
*** moving datasets to lazyload DB

Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DChIPRep'
    finding HTML links ... done
    DChIPRep                                html  
    DChIPRepResults                         html  
    DESeq2Data                              html  
    FDRresults                              html  
    TSS_galonska                            html  
    chip_galonska                           html  
    exampleChipData                         html  
    exampleInputData                        html  
    exampleSampleTable                      html  
    getMATfromDataFrame                     html  
    importData                              html  
    importDataFromMatrices                  html  
    importData_soGGi                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:36: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:14: file link 'GenomicRanges-class' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:27: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/importData_soGGi.Rd:65: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
    input_galonska                          html  
    plotProfiles                            html  
    plotSignificance                        html  
    resultsDChIPRep                         html  
    robust_mean                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpuUhMO9/R.INSTALL25444b9498d/DChIPRep/man/robust_mean.Rd:17: file link 'smhuber' in package 'smoothmest' does not exist and so has been treated as a topic
    runTesting                              html  
    sample_table_galonska                   html  
    show                                    html  
    summarizeCountsPerPosition              html  
    testData                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
In R CMD INSTALL

install for x64

* installing *source* package 'DChIPRep' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
* MD5 sums
packaged installation of 'DChIPRep' as DChIPRep_1.10.0.zip
* DONE (DChIPRep)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DChIPRep' successfully unpacked and MD5 sums checked
In R CMD INSTALL