Cole Trapnell
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/monocle |
| Branch: RELEASE_3_7 |
| Last Commit: f36f3b5 |
| Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:38:39 -0400 (Wed, 17 Oct 2018).
| Package 934/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| monocle 2.8.0 Cole Trapnell
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: monocle |
| Version: 2.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/monocle_2.8.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL monocle_2.8.0.zip && rm monocle_2.8.0.tar.gz monocle_2.8.0.zip |
| StartedAt: 2018-10-16 20:10:59 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:14:48 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 228.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/monocle_2.8.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL monocle_2.8.0.zip && rm monocle_2.8.0.tar.gz monocle_2.8.0.zip
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install for i386
* installing *source* package 'monocle' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c clustering.cpp -o clustering.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/monocle.buildbin-libdir/monocle/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'monocle'
finding HTML links ... done
BEAM html
CellDataSet-methods html
CellDataSet html
CellType html
CellTypeHierarchy html
addCellType html
branchTest html
buildBranchCellDataSet html
calABCs html
calILRs html
calibrate_per_cell_total_proposal html
cellPairwiseDistances-set html
cellPairwiseDistances html
clusterCells html
finding level-2 HTML links ... done
clusterGenes html
compareModels html
detectBifurcationPoint html
detectGenes html
diff_test_helper html
differentialGeneTest html
dispersionTable html
estimateDispersionsForCellDataSet html
estimateSizeFactorsForMatrix html
estimate_t html
exportCDS html
extract_good_branched_ordering html
fitModel html
fit_model_helper html
genSmoothCurveResiduals html
genSmoothCurves html
get_classic_muscle_markers html
importCDS html
load_HSMM html
load_HSMM_markers html
load_lung html
markerDiffTable html
mcesApply html
minSpanningTree-set html
minSpanningTree html
newCellDataSet html
newCellTypeHierarchy html
orderCells html
order_p_node html
package-deprecated html
plot_cell_clusters html
plot_cell_trajectory html
plot_clusters html
plot_coexpression_matrix html
plot_complex_cell_trajectory html
plot_genes_branched_heatmap html
plot_genes_branched_pseudotime html
plot_genes_in_pseudotime html
plot_genes_jitter html
plot_genes_positive_cells html
plot_genes_violin html
plot_multiple_branches_heatmap html
plot_multiple_branches_pseudotime html
plot_ordering_genes html
plot_pc_variance_explained html
plot_pseudotime_heatmap html
plot_rho_delta html
pq_helper html
reduceDimension html
reducedDimA-set html
reducedDimA html
reducedDimK-set html
reducedDimK html
reducedDimS-set html
reducedDimS html
reducedDimW-set html
reducedDimW html
relative2abs html
residualMatrix html
responseMatrix html
selectNegentropyGenes html
selectTopMarkers html
setOrderingFilter html
spike_df html
vstExprs html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'monocle' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c clustering.cpp -o clustering.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/monocle.buildbin-libdir/monocle/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'monocle' as monocle_2.8.0.zip
* DONE (monocle)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'monocle' successfully unpacked and MD5 sums checked
In R CMD INSTALL