| Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:42:59 -0400 (Wed, 17 Oct 2018).
| Package 583/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| geneXtendeR 1.6.0 Bohdan Khomtchouk
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: geneXtendeR |
| Version: 1.6.0 |
| Command: rm -rf geneXtendeR.buildbin-libdir && mkdir geneXtendeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geneXtendeR.buildbin-libdir geneXtendeR_1.6.0.tar.gz |
| StartedAt: 2018-10-17 06:22:44 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 06:23:40 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 56.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: geneXtendeR_1.6.0.zip |
| PackageFileSize: 6.868 MiB |
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### Running command:
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### rm -rf geneXtendeR.buildbin-libdir && mkdir geneXtendeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geneXtendeR.buildbin-libdir geneXtendeR_1.6.0.tar.gz
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install for i386
* installing *source* package 'geneXtendeR' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c annotate.c -o annotate.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c extract_number.c -o extract_number.o
extract_number.c: In function 'extractnumber':
extract_number.c:72:10: warning: variable 'n_1' set but not used [-Wunused-but-set-variable]
long n_1;
^
extract_number.c:66:10: warning: variable 'j_1' set but not used [-Wunused-but-set-variable]
long j_1;
^
extract_number.c:54:12: warning: variable 'pvcfcol5_5' set but not used [-Wunused-but-set-variable]
char * pvcfcol5_5;
^
extract_number.c:53:12: warning: variable 'pvcfcol4_4' set but not used [-Wunused-but-set-variable]
char * pvcfcol4_4;
^
extract_number.c:52:12: warning: variable 'pvcfcol3_3' set but not used [-Wunused-but-set-variable]
char * pvcfcol3_3;
^
extract_number.c:51:12: warning: variable 'pvcfcol2_2' set but not used [-Wunused-but-set-variable]
char * pvcfcol2_2;
^
extract_number.c:50:12: warning: variable 'pvcfcol1_1' set but not used [-Wunused-but-set-variable]
char * pvcfcol1_1;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c extract_peaks.c -o extract_peaks.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o geneXtendeR.dll tmp.def annotate.o extract_number.o extract_peaks.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/geneXtendeR.buildbin-libdir/geneXtendeR/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'geneXtendeR'
finding HTML links ... done
allPeakLengths html
annotate html
barChart html
cumlinePlot html
diffGO html
distinct html
hotspotPlot html
linePlot html
makeNetwork html
makeWordCloud html
meanPeakLength html
meanPeakLengthPlot html
peakLengthBoxplot html
peaksInput html
peaksMerge html
plotWordFreq html
rat html
samplepeaksinput html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'geneXtendeR' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c annotate.c -o annotate.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c extract_number.c -o extract_number.o
extract_number.c: In function 'extractnumber':
extract_number.c:72:10: warning: variable 'n_1' set but not used [-Wunused-but-set-variable]
long n_1;
^
extract_number.c:66:10: warning: variable 'j_1' set but not used [-Wunused-but-set-variable]
long j_1;
^
extract_number.c:54:12: warning: variable 'pvcfcol5_5' set but not used [-Wunused-but-set-variable]
char * pvcfcol5_5;
^
extract_number.c:53:12: warning: variable 'pvcfcol4_4' set but not used [-Wunused-but-set-variable]
char * pvcfcol4_4;
^
extract_number.c:52:12: warning: variable 'pvcfcol3_3' set but not used [-Wunused-but-set-variable]
char * pvcfcol3_3;
^
extract_number.c:51:12: warning: variable 'pvcfcol2_2' set but not used [-Wunused-but-set-variable]
char * pvcfcol2_2;
^
extract_number.c:50:12: warning: variable 'pvcfcol1_1' set but not used [-Wunused-but-set-variable]
char * pvcfcol1_1;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c extract_peaks.c -o extract_peaks.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o geneXtendeR.dll tmp.def annotate.o extract_number.o extract_peaks.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/geneXtendeR.buildbin-libdir/geneXtendeR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geneXtendeR' as geneXtendeR_1.6.0.zip
* DONE (geneXtendeR)
In R CMD INSTALL
In R CMD INSTALL