Nicolae Radu Zabet
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/DMRcaller |
| Branch: RELEASE_3_7 |
| Last Commit: 474898b |
| Last Changed Date: 2018-09-12 10:36:56 -0400 (Wed, 12 Sep 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:17 -0400 (Wed, 17 Oct 2018).
| Package 396/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DMRcaller 1.12.7 Nicolae Radu Zabet
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DMRcaller |
| Version: 1.12.7 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DMRcaller_1.12.7.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.12.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.12.7.zip && rm DMRcaller_1.12.7.tar.gz DMRcaller_1.12.7.zip |
| StartedAt: 2018-10-16 20:20:41 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:21:42 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 60.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DMRcaller_1.12.7.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.12.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.12.7.zip && rm DMRcaller_1.12.7.tar.gz DMRcaller_1.12.7.zip
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install for i386
* installing *source* package 'DMRcaller' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DMRcaller'
finding HTML links ... done
DMRcaller html
finding level-2 HTML links ... done
DMRsNoiseFilterCG html
GEs html
analyseReadsInsideRegionsForCondition html
computeDMRs html
computeDMRsReplicates html
computeMethylationDataCoverage html
computeMethylationDataSpatialCorrelation
html
computeMethylationProfile html
computeOverlapProfile html
extractGC html
filterDMRs html
getWholeChromosomes html
joinReplicates html
mergeDMRsIteratively html
methylationDataList html
plotLocalMethylationProfile html
plotMethylationDataCoverage html
plotMethylationDataSpatialCorrelation html
plotMethylationProfile html
plotMethylationProfileFromData html
plotOverlapProfile html
poolMethylationDatasets html
poolTwoMethylationDatasets html
readBismark html
readBismarkPool html
saveBismark html
syntheticDataReplicates html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DMRcaller' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DMRcaller' as DMRcaller_1.12.7.zip
* DONE (DMRcaller)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DMRcaller' successfully unpacked and MD5 sums checked
In R CMD INSTALL