Peter M. Haverty
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/genoset |
| Branch: RELEASE_3_6 |
| Last Commit: cd3de97 |
| Last Changed Date: 2017-10-30 12:39:33 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:47 -0400 (Thu, 12 Apr 2018).
| Package 571/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| genoset 1.34.0 Peter M. Haverty
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: genoset |
| Version: 1.34.0 |
| Command: rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/genoset_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=genoset.buildbin-libdir --merge-multiarch genoset_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL genoset_1.34.0.zip && rm genoset_1.34.0.tar.gz genoset_1.34.0.zip |
| StartedAt: 2018-04-11 18:40:26 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:42:00 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 94.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/genoset_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=genoset.buildbin-libdir --merge-multiarch genoset_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL genoset_1.34.0.zip && rm genoset_1.34.0.tar.gz genoset_1.34.0.zip
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install for i386
* installing *source* package 'genoset' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c bounds.c -o bounds.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c rangeSummaries.c -o rangeSummaries.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/genoset.buildbin-libdir/genoset/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genoset'
finding HTML links ... done
GenoSet-class html
finding level-2 HTML links ... done
RleDataFrame-class html
RleDataFrame-views html
baf2mbaf html
boundingIndices html
boundingIndicesByChr html
bounds2Rle html
calcGC html
calcGC2 html
chr-methods html
chrIndices-methods html
chrInfo-methods html
chrNames-methods html
chrOrder html
chrPartitioning html
cn2lr-methods html
do_rledf_range_summary html
do_rledf_views html
fixSegNAs html
gcCorrect html
genoPlot-methods html
genoPos-methods html
genome html
genomeAxis html
genomicranges-methods html
genoset-dataset html
genoset-methods html
genoset-package html
genoset-subset html
isGenomeOrder html
lr2cn html
modeCenter html
numCallable html
pos-methods html
rangeSampleMeans html
rangeSegMeanLength-methods html
rbindDataframe html
readGenoSet html
runCBS html
segPairTable-methods html
segTable-methods html
segs2Granges html
segs2Rle html
segs2RleDataFrame html
toGenomeOrder html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'genoset' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c bounds.c -o bounds.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c rangeSummaries.c -o rangeSummaries.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/genoset.buildbin-libdir/genoset/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genoset' as genoset_1.34.0.zip
* DONE (genoset)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'genoset' successfully unpacked and MD5 sums checked
In R CMD INSTALL